Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python

14 June 2021

Performance Integration

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Papers citing "Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python"

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Title
Comparing Lexical and Semantic Vector Search Methods When Classifying Medical Documents Lee Harris Philippe De Wilde James Bentham 4 0 0 16 May 2025
Accelerating Clinical NLP at Scale with a Hybrid Framework with Reduced GPU Demands: A Case Study in Dementia Identification Jianlin Shi Qiwei Gan Elizabeth Hanchrow Annie Bowles John Stanley Adam P. Bress Jordana B. Cohen Patrick R. Alba 34 0 0 16 Apr 2025
CRTRE: Causal Rule Generation with Target Trial Emulation Framework Junda Wang Weijian Li Han Wang Hanjia Lyu Caroline P. Thirukumaran A. Mesfin Hong-ye Yu Jiebo Luo 50 0 0 10 Nov 2024
Data Extraction Attacks in Retrieval-Augmented Generation via Backdoors Yuefeng Peng Junda Wang Hong-ye Yu Amir Houmansadr SILM 65 2 0 03 Nov 2024
RaTEScore: A Metric for Radiology Report Generation W. Zhao Chaoyi Wu X. Zhang Ya Zhang Yanfeng Wang Weidi Xie 24 8 0 24 Jun 2024
LLM-Based Section Identifiers Excel on Open Source but Stumble in Real World Applications Saranya Krishnamoorthy Ayush Singh Shabnam Tafreshi 29 0 0 25 Apr 2024
Korean Bio-Medical Corpus (KBMC) for Medical Named Entity Recognition Sungjoo Byun Jiseung Hong Sumin Park Dongjun Jang Jean Seo Minseok Kim Chaeyoung Oh Hyopil Shin 24 0 0 24 Mar 2024
HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools Mario Sanger Samuele Garda Xing David Wang Leon Weber-Genzel Pia Droop Benedikt Fuchs Alan Akbik Ulf Leser 43 6 0 19 Feb 2024
Assertion Detection Large Language Model In-context Learning LoRA Fine-tuning Yuelyu Ji Zeshui Yu Yanshan Wang 24 0 0 31 Jan 2024
Ascle: A Python Natural Language Processing Toolkit for Medical Text Generation Rui Yang Qingcheng Zeng Keen You Yujie Qiao Lucas Huang ... Dragomir R. Radev Zhiyong Lu Hua Xu Qingyu Chen Irene Z Li ELM LM&MA 31 3 0 28 Nov 2023
Extracting periodontitis diagnosis in clinical notes with RoBERTa and regular expression Yao-Shun Chuang Chun-Teh Lee Ryan Brandon Trung Duong Tran O. Tokede Muhammad Walji Xiaoqian Jiang 21 2 0 17 Nov 2023
calamanCy: A Tagalog Natural Language Processing Toolkit Lester James V. Miranda 11 0 0 13 Nov 2023
NoteChat: A Dataset of Synthetic Doctor-Patient Conversations Conditioned on Clinical Notes Junda Wang Zonghai Yao Zhichao Yang Huixue Zhou Rumeng Li Xun Wang Yucheng Xu Hong-ye Yu LM&MA 40 21 0 24 Oct 2023
Large Language Models to Identify Social Determinants of Health in Electronic Health Records Marco Guevara Shan Chen S. Thomas T. Chaunzwa I. Franco ... Susan M. Harper Hugo J. W. L. Aerts G. Savova Raymond H. Mak Danielle S. Bitterman LM&MA 23 113 0 11 Aug 2023
Effective Matching of Patients to Clinical Trials using Entity Extraction and Neural Re-ranking Wojciech Kusa Óscar E. Mendoza Petr Knoth Gabriella Pasi Allan Hanbury 25 7 0 01 Jul 2023
UMASS_BioNLP at MEDIQA-Chat 2023: Can LLMs generate high-quality synthetic note-oriented doctor-patient conversations? Junda Wang Zonghai Yao Avijit Mitra Samuel Osebe Zhichao Yang Hongfeng Yu LM&MA MedIm 29 13 0 29 Jun 2023
Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy Shan Chen Marco Guevara N. Ramirez Arpi Murray J. Warner Hugo J. W. L. Aerts Timothy A. Miller G. Savova Raymond H. Mak Danielle S. Bitterman 31 12 0 24 Mar 2023
Applying unsupervised keyphrase methods on concepts extracted from discharge sheets Hoda Memarzadeh Nasser Ghadiri Matthias Samwald Maryam Lotfi Shahreza 44 0 0 15 Mar 2023
Clinical BioBERT Hyperparameter Optimization using Genetic Algorithm N. Kollapally J. Geller 11 2 0 08 Feb 2023
Cross-institution text mining to uncover clinical associations: a case study relating social factors and code status in intensive care medicine Madhumita Sushil A. Butte E. Schuit Maarten van Smeden A. Leeuwenberg 9 1 0 16 Jan 2023
An Automatic SOAP Classification System Using Weakly Supervision And Transfer Learning Sunjae Kwon Zhichao Yang Hong-ye Yu 26 2 0 26 Nov 2022
Auditing Algorithmic Fairness in Machine Learning for Health with Severity-Based LOGAN Anaelia Ovalle Sunipa Dev Jieyu Zhao Majid Sarrafzadeh Kai-Wei Chang 11 2 0 16 Nov 2022
Natural Language Processing Methods to Identify Oncology Patients at High Risk for Acute Care with Clinical Notes Claudio Fanconi Marieke M. van Buchem Tina Hernandez-Boussard LM&MA 11 8 0 28 Sep 2022
Negation detection in Dutch clinical texts: an evaluation of rule-based and machine learning methods Bram van Es L. Reteig Sander C Tan M. Schraagen Myrthe M. Hemker S. R. Arends Miguel Rios S. Haitjema 21 12 0 01 Sep 2022
Assessing mortality prediction through different representation models based on concepts extracted from clinical notes Hoda Memarzadeh Nasser Ghadiri Maryam Lotfi Shahreza 26 0 0 22 Jul 2022
EHRKit: A Python Natural Language Processing Toolkit for Electronic Health Record Texts Irene Z Li Keen You Yujie Qiao Lucas Huang Chia-Chun Hsieh Benjamin Rosand Xiangru Tang Dragomir R. Radev 45 4 0 13 Apr 2022
Radiology Text Analysis System (RadText): Architecture and Evaluation Song Wang Mingquan Lin Ying Ding George Shih Zhiyong Lu Yifan Peng 29 8 0 19 Mar 2022
Literature-Augmented Clinical Outcome Prediction Aakanksha Naik Sravanthi Parasa Sergey Feldman Lucy Lu Wang Tom Hope LM&MA 26 25 0 16 Nov 2021
A Study into patient similarity through representation learning from medical records Hoda Memarzadeh Nasser Ghadiri Matthias Samwald Maryam Lotfi Shahreza 43 6 0 29 Apr 2021
Neural Entity Linking: A Survey of Models Based on Deep Learning Ozge Sevgili Artem Shelmanov Mikhail V. Arkhipov Alexander Panchenko Christian Biemann VLM 3DV AI4TS 23 118 0 31 May 2020