GraphiT: Encoding Graph Structure in Transformers

10 June 2021

Grégoire Mialon

Papers citing "GraphiT: Encoding Graph Structure in Transformers"

50 / 118 papers shown

Title
Relational Graph Transformer Vijay Prakash Dwivedi Sri Jaladi Yangyi Shen Federico López Charilaos I. Kanatsoulis Rishi Puri Matthias Fey Jure Leskovec 17 0 0 16 May 2025
Structural-Temporal Coupling Anomaly Detection with Dynamic Graph Transformer Chang Zong Yueting Zhuang Jian Shao Weiming Lu 41 0 0 13 May 2025
POET: Prompt Offset Tuning for Continual Human Action Adaptation Prachi Garg Joseph K J V. Balasubramanian Necati Cihan Camgöz Chengde Wan Kenrick Kin Weiguang Si Shugao Ma Fernando de la Torre 66 0 0 25 Apr 2025
A Survey of Graph Transformers: Architectures, Theories and Applications Chaohao Yuan Kangfei Zhao Ercan Engin Kuruoglu Liang Wang Tingyang Xu Wenbing Huang Deli Zhao Hong Cheng Yu Rong 57 4 0 23 Feb 2025
Simple Path Structural Encoding for Graph Transformers Louis Airale Antonio Longa Mattia Rigon Andrea Passerini Roberto Passerone 95 0 0 13 Feb 2025
Biologically Plausible Brain Graph Transformer Ciyuan Peng Yuelong Huang Qichao Dong Shuo Yu Feng Xia Chengqi Zhang Yaochu Jin 61 1 0 13 Feb 2025
Using Random Noise Equivariantly to Boost Graph Neural Networks Universally Xuben Wang Muhan Zhang 107 0 0 04 Feb 2025
Learning Efficient Positional Encodings with Graph Neural Networks Charilaos I. Kanatsoulis Evelyn Choi Stephanie Jegelka Jure Leskovec Alejandro Ribeiro 64 1 0 03 Feb 2025
DeepGate4: Efficient and Effective Representation Learning for Circuit Design at Scale Ziyang Zheng Shan Huang Qiang Xu Zhengyuan Shi Guohao Dai Ningyi Xu Qiang Xu GNN 89 2 0 02 Feb 2025
A Generalizable Anomaly Detection Method in Dynamic Graphs Xiao Yang Xuejiao Zhao Zhiqi Shen 84 1 0 21 Dec 2024
Towards Graph Foundation Models: A Study on the Generalization of Positional and Structural Encodings Billy Joe Franks Moshe Eliasof Semih Cantürk Guy Wolf Carola-Bibiane Schönlieb Sophie Fellenz Marius Kloft AI4CE 86 0 0 10 Dec 2024
Edge Weight Prediction For Category-Agnostic Pose Estimation Or Hirschorn S. Avidan 76 0 0 25 Nov 2024
Even Sparser Graph Transformers Hamed Shirzad Honghao Lin B. Venkatachalam A. Velingker David P. Woodruff Danica J. Sutherland GNN 98 3 0 25 Nov 2024
Towards Dynamic Message Passing on Graphs Junshu Sun Chenxue Yang Xiangyang Ji Qingming Huang Shuhui Wang 40 0 0 31 Oct 2024
Graph Transformers Dream of Electric Flow Xiang Cheng Lawrence Carin S. Sra 33 0 0 22 Oct 2024
Rethinking Graph Transformer Architecture Design for Node Classification Jiajun Zhou Xuanze Chen Chenxuan Xie Yu Shanqing Qi Xuan Xiaoniu Yang 28 0 0 15 Oct 2024
Cluster-wise Graph Transformer with Dual-granularity Kernelized Attention Siyuan Huang Yunchong Song Jiayue Zhou Zhouhan Lin 33 1 0 09 Oct 2024
Range-aware Positional Encoding via High-order Pretraining: Theory and Practice Viet Anh Nguyen Nhat-Khang Ngô Truong Son-Hy AI4CE 27 0 0 27 Sep 2024
Supra-Laplacian Encoding for Transformer on Dynamic Graphs Yannis Karmim Marc Lafon Raphael Fournier SÑiehotta Nicolas Thome 33 0 0 26 Sep 2024
Learning to Model Graph Structural Information on MLPs via Graph Structure Self-Contrasting Lirong Wu Haitao Lin Guojiang Zhao Cheng Tan Stan Z. Li 28 0 0 09 Sep 2024
Contrastive Representation Learning for Dynamic Link Prediction in Temporal Networks Amirhossein Nouranizadeh Fatemeh Tabatabaei Far Mohammad Rahmati AI4TS 32 1 0 22 Aug 2024
PolyFormer: Scalable Node-wise Filters via Polynomial Graph Transformer Jiahong Ma Mingguo He Zhewei Wei 52 2 0 19 Jul 2024
When Heterophily Meets Heterogeneity: New Graph Benchmarks and Effective Methods Junhong Lin Xiaojie Guo Shuaicheng Zhang Dawei Zhou Yada Zhu Julian Shun 38 1 0 15 Jul 2024
Graph Transformers: A Survey Ahsan Shehzad Feng Xia Shagufta Abid Ciyuan Peng Shuo Yu Dongyu Zhang Karin Verspoor AI4CE 37 9 0 13 Jul 2024
Foundations and Frontiers of Graph Learning Theory Yu Huang Min Zhou Menglin Yang Zhen Wang Muhan Zhang Jie Wang Hong Xie Hao Wang Defu Lian Enhong Chen AI4CE GNN 55 2 0 03 Jul 2024
Inference of Sequential Patterns for Neural Message Passing in Temporal Graphs J. V. Pichowski Vincenzo Perri Lisi Qarkaxhija Ingo Scholtes 45 0 0 24 Jun 2024
A Scalable and Effective Alternative to Graph Transformers Kaan Sancak Zhigang Hua Jin Fang Yan Xie Andrey Malevich Bo Long M. F. Balin Ümit V. Çatalyürek 48 1 0 17 Jun 2024
GKAN: Graph Kolmogorov-Arnold Networks Mehrdad Kiamari Mohammad Kiamari Bhaskar Krishnamachari 38 39 0 10 Jun 2024
What Can We Learn from State Space Models for Machine Learning on Graphs? Yinan Huang Siqi Miao Pan Li 44 7 0 09 Jun 2024
On the Expressive Power of Spectral Invariant Graph Neural Networks Bohang Zhang Lingxiao Zhao Haggai Maron 56 8 0 06 Jun 2024
Learning Long Range Dependencies on Graphs via Random Walks Dexiong Chen Till Hendrik Schulz Karsten Borgwardt 34 2 0 05 Jun 2024
Graph External Attention Enhanced Transformer Jianqing Liang Min Chen Jiye Liang 38 1 0 31 May 2024
Probabilistic Graph Rewiring via Virtual Nodes Chendi Qian Andrei Manolache Christopher Morris Mathias Niepert AI4CE 38 3 0 27 May 2024
Attending to Topological Spaces: The Cellular Transformer Rubén Ballester Pablo Hernández-García Mathilde Papillon Claudio Battiloro Nina Miolane Tolga Birdal Carles Casacuberta Sergio Escalera Mustafa Hajij 43 3 0 23 May 2024
Positional Knowledge is All You Need: Position-induced Transformer (PiT) for Operator Learning Junfeng Chen Kailiang Wu 37 3 0 15 May 2024
Graph as Point Set Xiyuan Wang Pan Li Muhan Zhang GNN 3DPC PINN 44 4 0 05 May 2024
ATNPA: A Unified View of Oversmoothing Alleviation in Graph Neural Networks Yufei Jin Xingquan Zhu 53 2 0 02 May 2024
CKGConv: General Graph Convolution with Continuous Kernels Liheng Ma Soumyasundar Pal Yitian Zhang Jiaming Zhou Yingxue Zhang Mark J. Coates 37 3 0 21 Apr 2024
VCR-Graphormer: A Mini-batch Graph Transformer via Virtual Connections Dongqi Fu Zhigang Hua Yan Xie Jin Fang Si Zhang Kaan Sancak Hao Wu Andrey Malevich Jingrui He Bo Long 42 19 0 24 Mar 2024
FlowerFormer: Empowering Neural Architecture Encoding using a Flow-aware Graph Transformer Dongyeong Hwang Hyunju Kim Sunwoo Kim Kijung Shin AI4CE 56 2 0 19 Mar 2024
Structural Positional Encoding for knowledge integration in transformer-based medical process monitoring Christopher Irwin Marco Dossena G. Leonardi Stefania Montani MedIm 34 0 0 13 Mar 2024
Comparing Graph Transformers via Positional Encodings Mitchell Black Zhengchao Wan Gal Mishne A. Nayyeri Yusu Wang 37 10 0 22 Feb 2024
Subgraphormer: Unifying Subgraph GNNs and Graph Transformers via Graph Products Guy Bar-Shalom Beatrice Bevilacqua Haggai Maron AI4CE 35 6 0 13 Feb 2024
Highly Accurate Disease Diagnosis and Highly Reproducible Biomarker Identification with PathFormer Zehao Dong Qihang Zhao Philip R. O. Payne Michael Province C. Cruchaga Muhan Zhang Tianyu Zhao Yixin Chen Fuhai Li AI4CE 21 6 0 11 Feb 2024
A Graph is Worth $K$ Words: Euclideanizing Graph using Pure Transformer Zhangyang Gao Daize Dong Cheng Tan Jun-Xiong Xia Bozhen Hu Stan Z. Li 46 6 0 04 Feb 2024
Graph-Mamba: Towards Long-Range Graph Sequence Modeling with Selective State Spaces Chloe X. Wang Oleksii Tsepa Jun Ma Bo Wang Mamba 30 86 0 01 Feb 2024
Graph Transformers without Positional Encodings Ayush Garg 27 0 0 31 Jan 2024
A Survey on Structure-Preserving Graph Transformers Van Thuy Hoang O-Joun Lee 49 5 0 29 Jan 2024
Gramformer: Learning Crowd Counting via Graph-Modulated Transformer Hui Lin Zhiheng Ma Xiaopeng Hong Qinnan Shangguan Deyu Meng ViT 47 17 0 08 Jan 2024
Graph Transformers for Large Graphs Vijay Prakash Dwivedi Yozen Liu A. Luu Xavier Bresson Neil Shah Tong Zhao GNN 26 8 0 18 Dec 2023