XOmiVAE: an interpretable deep learning model for cancer classification
using high-dimensional omics data

XOmiVAE: an interpretable deep learning model for cancer classification using high-dimensional omics data

26 May 2021

Eloise Withnell

Papers citing "XOmiVAE: an interpretable deep learning model for cancer classification using high-dimensional omics data"

14 / 14 papers shown

Title
GeSubNet: Gene Interaction Inference for Disease Subtype Network Generation Ziwei Yang Zheng Chen Xin Liu Rikuto Kotoge Peng Chen Yasuko Matsubara Yasushi Sakurai Jimeng Sun 34 0 0 17 Oct 2024
Explain Variance of Prediction in Variational Time Series Models for Clinical Deterioration Prediction Jiacheng Liu Jaideep Srivastava 33 0 0 09 Feb 2024
XAI meets Biology: A Comprehensive Review of Explainable AI in Bioinformatics Applications Zhongliang Zhou Mengxuan Hu Mariah Salcedo Nathan Gravel Wayland Yeung Aarya Venkat Dongliang Guo Jielu Zhang N. Kannan Sheng Li 30 6 0 11 Dec 2023
A Refutation of Shapley Values for Explainability Xuanxiang Huang Sasha Rubin FAtt 26 3 0 06 Sep 2023
MoCLIM: Towards Accurate Cancer Subtyping via Multi-Omics Contrastive Learning with Omics-Inference Modeling Ziwei Yang Zhengjun Chen Yasuko Matsubara Yasushi Sakurai 27 2 0 17 Aug 2023
The Inadequacy of Shapley Values for Explainability Xuanxiang Huang Sasha Rubin FAtt 37 41 0 16 Feb 2023
CustOmics: A versatile deep-learning based strategy for multi-omics integration Hakim Benkirane Yoann Pradat Stefan Michiels P. Cournède SyDa 16 4 0 12 Sep 2022
A Fair Experimental Comparison of Neural Network Architectures for Latent Representations of Multi-Omics for Drug Response Prediction Tony Hauptmann Stefan Kramer AI4CE 11 1 0 31 Aug 2022
Cancer Subtyping by Improved Transcriptomic Features Using Vector Quantized Variational Autoencoder Zheng Chen Ziwei Yang Lingwei Zhu Guang Shi Kun Yue Takashi Matsubara Shigehiko Kanaya M. Altaf-Ul-Amin DRL 11 5 0 20 Jul 2022
A systematic review of biologically-informed deep learning models for cancer: fundamental trends for encoding and interpreting oncology data Magdalena Wysocka Oskar Wysocki Marie Zufferey Dónal Landers André Freitas AI4CE 48 28 0 02 Jul 2022
Automated Cancer Subtyping via Vector Quantization Mutual Information Maximization Zheng Chen Lingwei Zhu Ziwei Yang Takashi Matsubara 24 7 0 22 Jun 2022
OmiTrans: generative adversarial networks based omics-to-omics translation framework Xiaoyu Zhang Yike Guo MedIm 50 5 0 27 Nov 2021
OmiEmbed: a unified multi-task deep learning framework for multi-omics data Xiaoyu Zhang Yuting Xing Kai Sun Yike Guo 27 60 0 03 Feb 2021
Methods for Interpreting and Understanding Deep Neural Networks G. Montavon Wojciech Samek K. Müller FaML 234 2,238 0 24 Jun 2017