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A Comprehensive Review of Computer-aided Whole-slide Image Analysis:
  from Datasets to Feature Extraction, Segmentation, Classification, and
  Detection Approaches

A Comprehensive Review of Computer-aided Whole-slide Image Analysis: from Datasets to Feature Extraction, Segmentation, Classification, and Detection Approaches

21 February 2021
Chen Li
Xintong Li
M. Rahaman
Xirong Li
Hongzan Sun
Hong-Yu Zhang
Yong Zhang
Xiaoqi Li
Jian Wu
Yudong Yao
M. Grzegorzek
ArXivPDFHTML

Papers citing "A Comprehensive Review of Computer-aided Whole-slide Image Analysis: from Datasets to Feature Extraction, Segmentation, Classification, and Detection Approaches"

41 / 41 papers shown
Title
PathoHR: Breast Cancer Survival Prediction on High-Resolution Pathological Images
PathoHR: Breast Cancer Survival Prediction on High-Resolution Pathological Images
Y. Luo
Shiru Wang
Jiaheng Liu
Jiaxuan Xiao
Rundong Xue
Zeyu Zhang
Hao Zhang
Yu Lu
Yang Zhao
Yutong Xie
42
0
0
23 Mar 2025
Slide-Level Prompt Learning with Vision Language Models for Few-Shot Multiple Instance Learning in Histopathology
Slide-Level Prompt Learning with Vision Language Models for Few-Shot Multiple Instance Learning in Histopathology
Devavrat Tomar
Guillaume Vray
Dwarikanath Mahapatra
Sudipta Roy
Jean-Philippe Thiran
Behzad Bozorgtabar
VLM
51
0
0
21 Mar 2025
Joint Modelling Histology and Molecular Markers for Cancer Classification
Joint Modelling Histology and Molecular Markers for Cancer Classification
Xiaofei Wang
Hanyu Liu
Yupei Zhang
Boyang Zhao
Hao Duan
Wanming Hu
Yonggao Mou
S. Price
Chao Li
89
0
0
11 Feb 2025
SparseFocus: Learning-based One-shot Autofocus for Microscopy with Sparse Content
Yongping Zhai
Xiaoxi Fu
Qiang Su
Jia Hu
Yake Zhang
...
Chaofan Zhang
Xiao Li
Wenxin Wang
Dongdong Wu
Shen Yan
33
0
0
10 Feb 2025
Diagnostic Text-guided Representation Learning in Hierarchical Classification for Pathological Whole Slide Image
Jiawen Li
Qiehe Sun
Renao Yan
Yizhi Wang
Yuqiu Fu
Yani Wei
Tian Guan
Huijuan Shi
Yonghonghe He
Anjia Han
37
3
0
16 Nov 2024
MECFormer: Multi-task Whole Slide Image Classification with Expert
  Consultation Network
MECFormer: Multi-task Whole Slide Image Classification with Expert Consultation Network
Doanh C. Bui
Jin Tae Kwak
DiffM
MedIm
25
0
0
06 Oct 2024
DiffKillR: Killing and Recreating Diffeomorphisms for Cell Annotation in Dense Microscopy Images
DiffKillR: Killing and Recreating Diffeomorphisms for Cell Annotation in Dense Microscopy Images
Chen Liu
Danqi Liao
Alejandro Parada-Mayorga
Alejandro Ribeiro
Marcello DiStasio
Smita Krishnaswamy
50
4
0
04 Oct 2024
FALFormer: Feature-aware Landmarks self-attention for Whole-slide Image
  Classification
FALFormer: Feature-aware Landmarks self-attention for Whole-slide Image Classification
Doanh C. Bui
T. Vuong
Jin Tae Kwak
MedIm
31
1
0
10 Jul 2024
Robust Ensemble Person Re-Identification via Orthogonal Fusion with
  Occlusion Handling
Robust Ensemble Person Re-Identification via Orthogonal Fusion with Occlusion Handling
Syeda Nyma Ferdous
Xin Li
41
0
0
29 Mar 2024
HistoSegCap: Capsules for Weakly-Supervised Semantic Segmentation of
  Histological Tissue Type in Whole Slide Images
HistoSegCap: Capsules for Weakly-Supervised Semantic Segmentation of Histological Tissue Type in Whole Slide Images
Mobina Mansoori
Sajjad Shahabodini
J. Abouei
Arash Mohammadi
Konstantinos N. Plataniotis
26
0
0
16 Feb 2024
Semi-supervised ViT knowledge distillation network with style transfer
  normalization for colorectal liver metastases survival prediction
Semi-supervised ViT knowledge distillation network with style transfer normalization for colorectal liver metastases survival prediction
Mohamed El Amine Elforaici
E. Montagnon
Francisco Perdigon Romero
W. Le
F. Azzi
Dominique Trudel
Bich Nguyen
Simon Turcotte
An Tang
Samuel Kadoury
MedIm
33
2
0
17 Nov 2023
Rotation-Agnostic Image Representation Learning for Digital Pathology
Rotation-Agnostic Image Representation Learning for Digital Pathology
Saghir Alfasly
A. Shafique
Peyman Nejat
Jibran A. Khan
Areej Alsaafin
Ghazal Alabtah
H. R. Tizhoosh
MedIm
29
6
0
14 Nov 2023
PHE-SICH-CT-IDS: A Benchmark CT Image Dataset for Evaluation Semantic
  Segmentation, Object Detection and Radiomic Feature Extraction of
  Perihematomal Edema in Spontaneous Intracerebral Hemorrhage
PHE-SICH-CT-IDS: A Benchmark CT Image Dataset for Evaluation Semantic Segmentation, Object Detection and Radiomic Feature Extraction of Perihematomal Edema in Spontaneous Intracerebral Hemorrhage
Deguo Ma
Chen Li
Lin Qiao
Tianming Du
Dechao Tang
Zhiyu Ma
M. Grzegorzek
Hongzan Sun
39
4
0
21 Aug 2023
ECPC-IDS:A benchmark endometrail cancer PET/CT image dataset for
  evaluation of semantic segmentation and detection of hypermetabolic regions
ECPC-IDS:A benchmark endometrail cancer PET/CT image dataset for evaluation of semantic segmentation and detection of hypermetabolic regions
Dechao Tang
Tianming Du
Deguo Ma
Zhiyuan Ma
Hongzan Sun
M. Grzegorzek
Huiyan Jiang
Chen Li
43
2
0
16 Aug 2023
DiffMix: Diffusion Model-based Data Synthesis for Nuclei Segmentation
  and Classification in Imbalanced Pathology Image Datasets
DiffMix: Diffusion Model-based Data Synthesis for Nuclei Segmentation and Classification in Imbalanced Pathology Image Datasets
Hyunwoo Oh
Won-Ki Jeong
MedIm
DiffM
17
29
0
25 Jun 2023
Geometry-Aware Latent Representation Learning for Modeling Disease
  Progression of Barrett's Esophagus
Geometry-Aware Latent Representation Learning for Modeling Disease Progression of Barrett's Esophagus
Vivien van Veldhuizen
DRL
36
0
0
17 Mar 2023
Breast Cancer Histopathology Image based Gene Expression Prediction
  using Spatial Transcriptomics data and Deep Learning
Breast Cancer Histopathology Image based Gene Expression Prediction using Spatial Transcriptomics data and Deep Learning
M. Rahaman
Ewan K. A. Millar
Erik H. W. Meijering
MedIm
6
27
0
17 Mar 2023
Diagnose Like a Pathologist: Transformer-Enabled Hierarchical
  Attention-Guided Multiple Instance Learning for Whole Slide Image
  Classification
Diagnose Like a Pathologist: Transformer-Enabled Hierarchical Attention-Guided Multiple Instance Learning for Whole Slide Image Classification
Conghao Xiong
Hao Chen
Joseph J. Y. Sung
Irwin King
MedIm
26
36
0
19 Jan 2023
FICE: Text-Conditioned Fashion Image Editing With Guided GAN Inversion
FICE: Text-Conditioned Fashion Image Editing With Guided GAN Inversion
Martin Pernuš
Clinton Fookes
Vitomir Štruc
Simon Dobrišek
DiffM
21
27
0
05 Jan 2023
Weakly-Supervised Deep Learning Model for Prostate Cancer Diagnosis and
  Gleason Grading of Histopathology Images
Weakly-Supervised Deep Learning Model for Prostate Cancer Diagnosis and Gleason Grading of Histopathology Images
M. Behzadi
M. Madani
Hanzhang Wang
Jun Bai
Ankit Bhardwaj
A. Tarakanova
H. Yamase
Ga Hie Nam
S. Nabavi
MedIm
36
10
0
25 Dec 2022
EBHI-Seg: A Novel Enteroscope Biopsy Histopathological Haematoxylin and
  Eosin Image Dataset for Image Segmentation Tasks
EBHI-Seg: A Novel Enteroscope Biopsy Histopathological Haematoxylin and Eosin Image Dataset for Image Segmentation Tasks
Li Shi
Xirong Li
W. Hua
Hao Chen
Jing Chen
...
Hongzan Sun
M. Grzegorzek
Shouliang Qi
Yueyang Teng
Chen Li
25
21
0
01 Dec 2022
GradMix for nuclei segmentation and classification in imbalanced
  pathology image datasets
GradMix for nuclei segmentation and classification in imbalanced pathology image datasets
Tan N. N. Doan
Kyungeun Kim
Boram Song
J. T. Kwak
14
9
0
24 Oct 2022
Bi-directional Weakly Supervised Knowledge Distillation for Whole Slide
  Image Classification
Bi-directional Weakly Supervised Knowledge Distillation for Whole Slide Image Classification
Linhao Qu
Xiao-Zhuo Luo
Manning Wang
Zhijian Song
WSOD
26
57
0
07 Oct 2022
Nuclei & Glands Instance Segmentation in Histology Images: A Narrative
  Review
Nuclei & Glands Instance Segmentation in Histology Images: A Narrative Review
Esha Sadia Nasir
Arshi Parvaiz
M. Fraz
26
14
0
26 Aug 2022
Deep Image Clustering with Contrastive Learning and Multi-scale Graph
  Convolutional Networks
Deep Image Clustering with Contrastive Learning and Multi-scale Graph Convolutional Networks
Yuan Xu
Dong Huang
Changdong Wang
Jianhuang Lai
SSL
18
18
0
14 Jul 2022
Feature Re-calibration based Multiple Instance Learning for Whole Slide
  Image Classification
Feature Re-calibration based Multiple Instance Learning for Whole Slide Image Classification
Philip Chikontwe
S. Nam
H. Go
Meejeong Kim
H. Sung
Sang Hyun Park
20
20
0
22 Jun 2022
A Comparative Study of Gastric Histopathology Sub-size Image
  Classification: from Linear Regression to Visual Transformer
A Comparative Study of Gastric Histopathology Sub-size Image Classification: from Linear Regression to Visual Transformer
Weiming Hu
Hao Chen
Wanli Liu
Xirong Li
Hongzan Sun
Xinyu Huang
M. Grzegorzek
Chen Li
33
14
0
25 May 2022
Global Contrast Masked Autoencoders Are Powerful Pathological
  Representation Learners
Global Contrast Masked Autoencoders Are Powerful Pathological Representation Learners
Hao Quan
Xingyu Li
Weixing Chen
Qun Bai
Mingchen Zou
Ruijie Yang
Tingting Zheng
R. Qi
Xin Gao
Xiaoyu Cui
MedIm
31
19
0
18 May 2022
Application of Graph Based Features in Computer Aided Diagnosis for
  Histopathological Image Classification of Gastric Cancer
Application of Graph Based Features in Computer Aided Diagnosis for Histopathological Image Classification of Gastric Cancer
Haiqing Zhang
Chen Li
Shiliang Ai
Hao Chen
Yuchao Zheng
Yixin Li
Xirong Li
Hongzan Sun
Xinyu Huang
M. Grzegorzek
23
1
0
17 May 2022
Application of Transfer Learning and Ensemble Learning in Image-level
  Classification for Breast Histopathology
Application of Transfer Learning and Ensemble Learning in Image-level Classification for Breast Histopathology
Yuchao Zheng
Chen Li
Xiaomin Zhou
Hao Chen
Hao Xu
...
Haiqing Zhang
Xirong Li
Hongzan Sun
Xinyu Huang
M. Grzegorzek
33
55
0
18 Apr 2022
TOD-CNN: An Effective Convolutional Neural Network for Tiny Object
  Detection in Sperm Videos
TOD-CNN: An Effective Convolutional Neural Network for Tiny Object Detection in Sperm Videos
Shuojia Zou
Chen Li
Hongzan Sun
Peng Xu
Jiawei Zhang
Pingli Ma
Yudong Yao
Xinyu Huang
M. Grzegorzek
22
28
0
18 Apr 2022
An application of Pixel Interval Down-sampling (PID) for dense tiny
  microorganism counting on environmental microorganism images
An application of Pixel Interval Down-sampling (PID) for dense tiny microorganism counting on environmental microorganism images
Jiawei Zhang
N. Xu
Chen Li
M. Rahaman
Yuhong Yao
Yu-Hao Lin
Jinghua Zhang
Tao Jiang
M. Grzegorzek
Wenjun Qin
23
7
0
04 Apr 2022
A Comprehensive Survey with Quantitative Comparison of Image Analysis
  Methods for Microorganism Biovolume Measurements
A Comprehensive Survey with Quantitative Comparison of Image Analysis Methods for Microorganism Biovolume Measurements
Jiawei Zhang
Chen Li
M. Rahaman
Yudong Yao
Pingli Ma
Jinghua Zhang
Xin Zhao
Tao Jiang
M. Grzegorzek
27
14
0
18 Feb 2022
EBHI:A New Enteroscope Biopsy Histopathological H&E Image Dataset for
  Image Classification Evaluation
EBHI:A New Enteroscope Biopsy Histopathological H&E Image Dataset for Image Classification Evaluation
Weiming Hu
Chen Li
Xirong Li
M. Rahaman
Yong Zhang
...
Yudong Yao
Hongzan Sun
N. Xu
Xinyu Huang
Marcin Grzegorze
38
19
0
17 Feb 2022
A State-of-the-art Survey of U-Net in Microscopic Image Analysis: from
  Simple Usage to Structure Mortification
A State-of-the-art Survey of U-Net in Microscopic Image Analysis: from Simple Usage to Structure Mortification
Jian Wu
Wanli Liu
Chen Li
Tao Jiang
Islam Mohammad Shariful
Hongzan Sun
Xiaoqi Li
Xintong Li
Xinyu Huang
M. Grzegorzek
SSeg
3DV
40
13
0
14 Feb 2022
Product Re-identification System in Fully Automated Defect Detection
Product Re-identification System in Fully Automated Defect Detection
Chenggui Sun
Lingling Song
23
3
0
20 Dec 2021
EMDS-7: Environmental Microorganism Image Dataset Seventh Version for
  Multiple Object Detection Evaluation
EMDS-7: Environmental Microorganism Image Dataset Seventh Version for Multiple Object Detection Evaluation
Hechen Yang
Chen Li
Xin Zhao
Bencheng Cai
Jiawei Zhang
...
Hongzan Sun
Yueyang Teng
Shouliang Qi
Tao Jiang
M. Grzegorzek
36
10
0
11 Oct 2021
TransMIL: Transformer based Correlated Multiple Instance Learning for
  Whole Slide Image Classification
TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification
Zhucheng Shao
Hao Bian
Yang Chen
Yifeng Wang
Jian Zhang
Xiangyang Ji
Yongbing Zhang
ViT
MedIm
37
635
0
02 Jun 2021
A State-of-the-art Survey of Object Detection Techniques in
  Microorganism Image Analysis: From Classical Methods to Deep Learning
  Approaches
A State-of-the-art Survey of Object Detection Techniques in Microorganism Image Analysis: From Classical Methods to Deep Learning Approaches
Pingli Ma
Chen Li
M. Rahaman
Yudong Yao
Jiawei Zhang
Shuojia Zou
Xin Zhao
M. Grzegorzek
32
62
0
07 May 2021
A State-of-the-art Survey of Artificial Neural Networks for Whole-slide
  Image Analysis:from Popular Convolutional Neural Networks to Potential Visual
  Transformers
A State-of-the-art Survey of Artificial Neural Networks for Whole-slide Image Analysis:from Popular Convolutional Neural Networks to Potential Visual Transformers
Xintong Li
Xirong Li
Chen Li
M. Rahaman
Jian Wu
Xiaoqi Li
Yudong Yao
M. Grzegorzek
ViT
MedIm
38
43
0
13 Apr 2021
Gastric histopathology image segmentation using a hierarchical
  conditional random field
Gastric histopathology image segmentation using a hierarchical conditional random field
Changhao Sun
Chen Li
Jinghua Zhang
Muhammad Rahaman
Shiliang Ai
Hao Chen
Frank Kulwa
Yixin Li
Xiaoyan Li
Tao Jiang
39
46
0
03 Mar 2020
1