A survey on shape-constraint deep learning for medical image segmentation

19 January 2021

Papers citing "A survey on shape-constraint deep learning for medical image segmentation"

42 / 42 papers shown

Title
Semi-supervised Instance Segmentation with a Learned Shape Prior Long Chen Weiwen Zhang Yuli Wu M. Strauch Dorit Merhof 3DPC 29 8 0 09 Sep 2023
Topology-Aware Segmentation Using Discrete Morse Theory Xiaoling Hu Yusu Wang Fuxin Li Dimitris Samaras Chao Chen 60 91 0 18 Mar 2021
Annotation-Efficient Learning for Medical Image Segmentation based on Noisy Pseudo Labels and Adversarial Learning Lu Wang D. Guo Guotai Wang Shaoting Zhang MedIm GAN 38 30 0 29 Dec 2020
High-level Prior-based Loss Functions for Medical Image Segmentation: A Survey Rosana El Jurdia Caroline Petitjean P. Honeine Veronika Cheplygina F. Abdallah SSeg MedIm 70 82 0 16 Nov 2020
Shape Constrained CNN for Cardiac MR Segmentation with Simultaneous Prediction of Shape and Pose Parameters Sofie Tilborghs T. Dresselaers P. Claus J. Bogaert F. Maes 52 10 0 18 Oct 2020
Geometric Loss for Deep Multiple Sclerosis lesion Segmentation Hang Zhang Jinwei Zhang Rongguang Wang Qihao Zhang S. Gauthier P. Spincemaille Thanh D. Nguyen Yi Wang 23 22 0 29 Sep 2020
Medical Image Segmentation Using Deep Learning: A Survey Risheng Wang Tao Lei Xiaogang Du Yong Wan Hongying Meng Asoke K. Nandi SSeg OOD 80 566 0 28 Sep 2020
A persistent homology-based topological loss function for multi-class CNN segmentation of cardiac MRI Nicholas Byrne J. Clough Giovanni Montana A. King 26 27 0 21 Aug 2020
ARPM-net: A novel CNN-based adversarial method with Markov Random Field enhancement for prostate and organs at risk segmentation in pelvic CT images Zhuangzhuang Zhang T. Zhao Hiram Gay Weixiong Zhang B. Sun MedIm 70 29 0 11 Aug 2020
A weakly supervised registration-based framework for prostate segmentation via the combination of statistical shape model and CNN Chunxia Qin Xiaojun Chen J. Troccaz 33 1 0 23 Jul 2020
Shape-aware Meta-learning for Generalizing Prostate MRI Segmentation to Unseen Domains Quande Liu Qi Dou Pheng-Ann Heng OOD 106 198 0 04 Jul 2020
Post-DAE: Anatomically Plausible Segmentation via Post-Processing with Denoising Autoencoders Agostina J. Larrazabal Cesar E. Martínez Ben Glocker Enzo Ferrante 96 66 0 24 Jun 2020
Joint Left Atrial Segmentation and Scar Quantification Based on a DNN with Spatial Encoding and Shape Attention Lei Li Xin Weng Julia A. Schnabel Xiahai Zhuang 52 32 0 23 Jun 2020
Cardiac Segmentation with Strong Anatomical Guarantees Nathan Painchaud Youssef Skandarani Thierry Judge Olivier Bernard A. Lalande Pierre-Marc Jodoin 56 101 0 15 Jun 2020
Deep Semantic Segmentation of Natural and Medical Images: A Review Saeid Asgari Taghanaki Kumar Abhishek Joseph Paul Cohen Julien Cohen-Adad Ghassan Hamarneh SSeg VLM 125 681 0 16 Oct 2019
A Topological Loss Function for Deep-Learning based Image Segmentation using Persistent Homology J. Clough Nicholas Byrne Ilkay Oksuz Zhenzhong Lan Julia A. Schnabel A. King 61 221 0 04 Oct 2019
Deep Active Lesion Segmentation Ali Hatamizadeh A. Hoogi Debleena Sengupta Wuyue Lu B. Wilcox D. Rubin Demetri Terzopoulos MedIm 48 51 0 19 Aug 2019
Topology-Preserving Deep Image Segmentation Xiaoling Hu Fuxin Li Dimitris Samaras Chao Chen 45 278 0 12 Jun 2019
Reducing the Hausdorff Distance in Medical Image Segmentation with Convolutional Neural Networks Davood Karimi Septimiu E. Salcudean MedIm 80 397 0 22 Apr 2019
Explicit topological priors for deep-learning based image segmentation using persistent homology J. Clough Ilkay Oksuz Nicholas Byrne Julia A. Schnabel A. King 51 67 0 29 Jan 2019
Neural Persistence: A Complexity Measure for Deep Neural Networks Using Algebraic Topology Bastian Rieck Matteo Togninalli Christian Bock Michael Moor Max Horn Thomas Gumbsch Karsten Borgwardt 66 111 0 23 Dec 2018
Boundary loss for highly unbalanced segmentation H. Kervadec Jihene Bouchtiba Christian Desrosiers Eric Granger Jose Dolz Ismail Ben Ayed 46 481 0 17 Dec 2018
An End-to-end Approach to Semantic Segmentation with 3D CNN and Posterior-CRF in Medical Images Shuai Chen Marleen de Bruijne MedIm 49 11 0 08 Nov 2018
Conditional Random Fields as Recurrent Neural Networks for 3D Medical Imaging Segmentation Miguel A. B. Monteiro Mário A. T. Figueiredo Arlindo L. Oliveira MedIm SSeg 36 26 0 19 Jul 2018
Fully Automatic Myocardial Segmentation of Contrast Echocardiography Sequence Using Random Forests Guided by Shape Model Yuanwei Li C. Ho M. Toulemonde N. Chahal R. Senior M. Tang 18 46 0 19 Jun 2018
On Regularized Losses for Weakly-supervised CNN Segmentation Meng Tang Federico Perazzi Abdelaziz Djelouah Ismail Ben Ayed Christopher Schroers Yuri Boykov 66 295 0 26 Mar 2018
ASMCNN: An Efficient Brain Extraction Using Active Shape Model and Convolutional Neural Networks D. M. Nguyen Duy M. Nguyen T. T. N. Mai Thu Nguyen Khanh T. Tran Anh Triet Nguyen B. Pham Binh T. Nguyen 50 17 0 05 Feb 2018
Anatomically Constrained Neural Networks (ACNN): Application to Cardiac Image Enhancement and Segmentation Ozan Oktay Enzo Ferrante Konstantinos Kamnitsas M. Heinrich Wenjia Bai ... T. Dawes D. O’Regan Bernhard Kainz Ben Glocker Daniel Rueckert 54 657 0 22 May 2017
A deep level set method for image segmentation Min Tang Sepehr Valipour Zichen Vincent Zhang Dana Cobzas Martin Jägersand 37 31 0 17 May 2017
Deep Learning for Medical Image Processing: Overview, Challenges and Future M. I. Razzak S. Naz Ahmad Zaib 54 1,011 0 22 Apr 2017
DeepNAT: Deep Convolutional Neural Network for Segmenting Neuroanatomy Christian Wachinger M. Reuter T. Klein 3DV 352 332 0 27 Feb 2017
A Survey on Deep Learning in Medical Image Analysis G. Litjens Thijs Kooi B. Bejnordi A. Setio F. Ciompi Mohsen Ghafoorian Jeroen van der Laak Bram van Ginneken C. I. Sánchez OOD 669 10,786 0 19 Feb 2017
A deep learning model integrating FCNNs and CRFs for brain tumor segmentation Xiaomei Zhao Yihong Wu Guidong Song Zhenye Li Yazhuo Zhang Yong-Xian Fan MedIm 50 673 0 15 Feb 2017
Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional Neural Networks and 3D Conditional Random Fields P. Christ M. Elshaer Florian Ettlinger S. Tatavarty Marc Bickel ... Felix O. Hofmann M. D’Anastasi Wieland H. Sommer Seyed-Ahmad Ahmadi Bjoern Menze MedIm 58 633 0 07 Oct 2016
Deep Active Contours Christian Rupprecht Elizabeth Huaroc Maximilian Baust Nassir Navab 235 64 0 18 Jul 2016
Incorporating prior knowledge in medical image segmentation: a survey M. Nosrati Ghassan Hamarneh 37 62 0 05 Jul 2016
3D Deeply Supervised Network for Automatic Liver Segmentation from CT Volumes Qi Dou Hao Chen Yueming Jin Lequan Yu J. Qin Pheng-Ann Heng MedIm 76 345 0 03 Jul 2016
DeepCut: Object Segmentation from Bounding Box Annotations using Convolutional Neural Networks Martin Rajchl M. J. Lee Ozan Oktay Konstantinos Kamnitsas Jonathan Passerat-Palmbach ... Mellisa Damodaram Mary A. Rutherford Joseph V. Hajnal Bernhard Kainz Daniel Rueckert 60 377 0 25 May 2016
Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation Konstantinos Kamnitsas C. Ledig Virginia Newcombe Joanna P. Simpson A. D. Kane David Menon Daniel Rueckert Ben Glocker MedIm 3DV 134 3,057 0 18 Mar 2016
Sub-cortical brain structure segmentation using F-CNN's Mahsa Shakeri Stavros Tsogkas Enzo Ferrante S. Lippé Samuel Kadoury Nikos Paragios Iasonas Kokkinos 59 119 0 05 Feb 2016
A Combined Deep-Learning and Deformable-Model Approach to Fully Automatic Segmentation of the Left Ventricle in Cardiac MRI M. Avendi A. Kheradvar Hamid Jafarkhani 64 565 0 25 Dec 2015
Conditional Random Fields as Recurrent Neural Networks Shuai Zheng Sadeep Jayasumana Bernardino Romera-Paredes Vibhav Vineet Zhizhong Su Dalong Du Chang Huang Philip Torr SSeg 241 2,536 0 11 Feb 2015