Population-Based Black-Box Optimization for Biological Sequence Design

Population-Based Black-Box Optimization for Biological Sequence Design

5 June 2020

Christof Angermüller

Zelda E. Mariet

Kevin Patrick Murphy

Lucy J. Colwell

Papers citing "Population-Based Black-Box Optimization for Biological Sequence Design"

13 / 13 papers shown

Title
Optimistic Games for Combinatorial Bayesian Optimization with Application to Protein Design Melis Ilayda Bal Pier Giuseppe Sessa Mojmír Mutný Andreas Krause 34 0 0 27 Sep 2024
BetterBodies: Reinforcement Learning guided Diffusion for Antibody Sequence Design Yannick Vogt Mehdi Naouar M. Kalweit Christoph Cornelius Miething Justus Duyster Joschka Boedecker Gabriel Kalweit DiffM 34 0 0 09 Sep 2024
Is novelty predictable? Clara Fannjiang Jennifer Listgarten AI4CE 17 14 0 01 Jun 2023
Forecasting labels under distribution-shift for machine-guided sequence design Laurence Wheelock Stephen Malina Jeffrey M. Gerold Sam Sinai 13 4 0 18 Nov 2022
Accelerating Bayesian Optimization for Biological Sequence Design with Denoising Autoencoders Samuel Stanton Wesley J. Maddox Nate Gruver Phillip M. Maffettone E. Delaney Peyton Greenside A. Wilson BDL 38 89 0 23 Mar 2022
Design-Bench: Benchmarks for Data-Driven Offline Model-Based Optimization Brandon Trabucco Xinyang Geng Aviral Kumar Sergey Levine OffRL 29 95 0 17 Feb 2022
Fourier Representations for Black-Box Optimization over Categorical Variables Hamid Dadkhahi Jesus Rios Karthikeyan Shanmugam Payel Das 35 11 0 08 Feb 2022
Data-Driven Offline Optimization For Architecting Hardware Accelerators Aviral Kumar Amir Yazdanbakhsh Milad Hashemi Kevin Swersky Sergey Levine 27 36 0 20 Oct 2021
Unifying Likelihood-free Inference with Black-box Optimization and Beyond Dinghuai Zhang Jie Fu Yoshua Bengio Aaron Courville 31 13 0 06 Oct 2021
Conservative Objective Models for Effective Offline Model-Based Optimization Brandon Trabucco Aviral Kumar Xinyang Geng Sergey Levine OffRL 42 86 0 14 Jul 2021
Adaptive machine learning for protein engineering B. Hie Kevin Kaichuang Yang 27 80 0 10 Jun 2021
Fast differentiable DNA and protein sequence optimization for molecular design Johannes Linder Georg Seelig 28 54 0 22 May 2020
Design by adaptive sampling David H. Brookes Jennifer Listgarten TPM 39 65 0 08 Oct 2018