clDice -- A Novel Topology-Preserving Loss Function for Tubular Structure Segmentation

16 March 2020

Papers citing "clDice -- A Novel Topology-Preserving Loss Function for Tubular Structure Segmentation"

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Title
A Novel Hybrid Approach for Retinal Vessel Segmentation with Dynamic Long-Range Dependency and Multi-Scale Retinal Edge Fusion Enhancement Yihao Ouyang Xunheng Kuang Mengjia Xiong Zhida Wang Yuanquan Wang 48 0 0 18 Apr 2025
Topology-Preserving Loss for Accurate and Anatomically Consistent Cardiac Mesh Reconstruction Chenyu Zhang Yihao Luo Yinzhe Wu Choon Hwai Yap Guang Yang 51 0 0 10 Mar 2025
COMMA: Coordinate-aware Modulated Mamba Network for 3D Dispersed Vessel Segmentation Gen Shi Hui Zhang Jie Tian Mamba 73 0 0 04 Mar 2025
Enhancing Retinal Vessel Segmentation Generalization via Layout-Aware Generative Modelling Jonathan Fhima Jan Van Eijgen Lennert Beeckmans Thomas Jacobs Moti Freiman Luis Filipe Nakayama Ingeborg Stalmans Chaim Baskin Joachim A. Behar MedIm 69 0 0 03 Mar 2025
DSCA: A Digital Subtraction Angiography Sequence Dataset and Spatio-Temporal Model for Cerebral Artery Segmentation Qihang Xie Mengguo Guo Lei Mou Dan Zhang Da Chen Caifeng Shan Yitian Zhao Ruisheng Su Jiong Zhang 113 1 0 21 Feb 2025
Towards Scalable Topological Regularizers Hiu-Tung Wong Darrick Lee Hong Yan BDL 64 0 0 24 Jan 2025
Conformable Convolution for Topologically Aware Learning of Complex Anatomical Structures Yousef Yeganeh Rui Xiao Goktug Guvercin Nassir Navab Azade Farshad MedIm 45 0 0 31 Dec 2024
IRFusionFormer: Enhancing Pavement Crack Segmentation with RGB-T Fusion and Topological-Based Loss Ruiqiang Xiao Xiaohu Chen 39 0 0 31 Dec 2024
vesselFM: A Foundation Model for Universal 3D Blood Vessel Segmentation Bastian Wittmann Yannick Wattenberg Tamaz Amiranashvili Suprosanna Shit Bjoern H. Menze 92 3 0 26 Nov 2024
Enhancing the automatic segmentation and analysis of 3D liver vasculature models Yassine Machta Omar S. Ali Kevin Hakkakian Ana Vlascenau Amaury Facque Nicolas Golse I. Vignon-Clementel 90 0 0 24 Nov 2024
TopoTxR: A topology-guided deep convolutional network for breast parenchyma learning on DCE-MRIs Fan Wang Zhilin Zou N. Sakla Luke Partyka Nil Rawal ... Wei Zhao Haibin Ling Chuan Huang Prateek Prasanna Chong Chen MedIm 29 3 0 05 Nov 2024
Topograph: An efficient Graph-Based Framework for Strictly Topology Preserving Image Segmentation Laurin Lux Alexander H. Berger Alexander Weers Nico Stucki Daniel Rueckert Ulrich Bauer Johannes C. Paetzold 42 2 0 05 Nov 2024
TopoDiffusionNet: A Topology-aware Diffusion Model Saumya Gupta Dimitris Samaras Chong Chen DiffM 44 4 0 22 Oct 2024
SACNet: A Spatially Adaptive Convolution Network for 2D Multi-organ Medical Segmentation Lin Zhang Wenbo Gao Jie Yi Yunyun Yang 46 0 0 14 Jul 2024
Centerline Boundary Dice Loss for Vascular Segmentation Pengcheng Shi Jiesi Hu Yanwu Yang Zilve Gao Wei Liu Ting Ma 45 8 0 01 Jul 2024
Self Pre-training with Topology- and Spatiality-aware Masked Autoencoders for 3D Medical Image Segmentation Pengfei Gu Yejia Zhang Huimin Li Chaoli Wang Danny Chen MedIm 71 1 0 15 Jun 2024
DeNVeR: Deformable Neural Vessel Representations for Unsupervised Video Vessel Segmentation Chun-Hung Wu Shih-Hong Chen Chih-Yao Hu Hsin-Yu Wu Kai-Hsin Chen Yu-You Chen Chih-Hai Su Chih-Kuo Lee Yu-Lun Liu 62 2 0 03 Jun 2024
Enhancing Boundary Segmentation for Topological Accuracy with Skeleton-based Methods Chuni Liu Boyuan Ma Xiaojuan Ban Yujie Xie Hao Wang Weihua Xue Jingchao Ma Ke Xu 46 4 0 29 Apr 2024
Guidelines for Cerebrovascular Segmentation: Managing Imperfect Annotations in the context of Semi-Supervised Learning Pierre Rougé Pierre-Henri Conze Nicolas Passat Odyssée Merveille 44 0 0 02 Apr 2024
A Geometric Algorithm for Tubular Shape Reconstruction from Skeletal Representation Guoqing Zhang Songzi Cat 33 0 0 20 Feb 2024
Deep Learning for Vascular Segmentation and Applications in Phase Contrast Tomography Imaging Ekin Yagis S. Aslani Yashvardhan Jain Yang Zhou Shahrokh Rahmani ... M. Ackermann D. Jonigk Paul Tafforeau Peter D Lee Claire L. Walsh 45 4 0 22 Nov 2023
Topology-Aware Uncertainty for Image Segmentation Saumya Gupta Yikai Zhang Xiaoling Hu Prateek Prasanna Chao Chen 30 27 0 09 Jun 2023
Extremely weakly-supervised blood vessel segmentation with physiologically based synthesis and domain adaptation Peidi Xu O. Sosnovtseva Charlotte Mehlin Sørensen Kenny Erleben S. Darkner 37 4 0 26 May 2023
JoB-VS: Joint Brain-Vessel Segmentation in TOF-MRA Images Natalia Valderrama Ioannis Pitsiorlas Luisa Vargas Pablo Arbelaez Maria A. Zuluaga 26 2 0 16 Apr 2023
Directional Connectivity-based Segmentation of Medical Images Ziyun Yang Sina Farsiu 35 36 0 31 Mar 2023
Link Prediction for Flow-Driven Spatial Networks Bastian Wittmann Johannes C. Paetzold Chinmay Prabhakar Daniel Rueckert Bjoern H. Menze GNN 33 7 0 25 Mar 2023
Multi-site, Multi-domain Airway Tree Modeling (ATM'22): A Public Benchmark for Pulmonary Airway Segmentation Minghui Zhang Yang Wu Hanxiao Zhang Yulei Qin Hao Zheng ... Raúl San José Estépar C. Espinosa Jiayuan Sun Guang-Zhong Yang Yun Gu 15 12 0 10 Mar 2023
CTG-Net: An Efficient Cascaded Framework Driven by Terminal Guidance Mechanism for Dilated Pancreatic Duct Segmentation Liwen Zou Zhen-zhai Cai Y. Qiu Luying Gui L. Mao Xiaoping Yang MedIm 30 6 0 06 Mar 2023
Topologically faithful image segmentation via induced matching of persistence barcodes Nicolas Stucki Johannes C. Paetzold Suprosanna Shit Bjoern H. Menze Ulrich Bauer 22 38 0 28 Nov 2022
ImageCAS: A Large-Scale Dataset and Benchmark for Coronary Artery Segmentation based on Computed Tomography Angiography Images An Zeng Chunbiao Wu Meiping Huang Jian Zhuang Shanshan Bi ... Tianchen Wang Yiyu Shi Xuelong Li Guisen Lin Xiaowei Xu 28 58 0 03 Nov 2022
Automated analysis of diabetic retinopathy using vessel segmentation maps as inductive bias Linus Kreitner Ivan Ezhov Daniel Rueckert Johannes C. Paetzold M. Menten 37 2 0 28 Oct 2022
Adversarial Transformer for Repairing Human Airway Segmentation Zeyu Tang Nan Yang Simon Walsh Guang Yang ViT MedIm 24 13 0 21 Oct 2022
RibSeg v2: A Large-scale Benchmark for Rib Labeling and Anatomical Centerline Extraction L. Jin Shixuan Gu D. Wei Jason Ken Adhinarta Kaiming Kuang Yongjie Jessica Zhang Hanspeter Pfister Bingbing Ni Jiancheng Yang Ming Li 3DPC 27 15 0 18 Oct 2022
A Learning-based Framework for Topology-Preserving Segmentation using Quasiconformal Mappings Han Zhang L. Lui 37 6 0 07 Oct 2022
PointScatter: Point Set Representation for Tubular Structure Extraction Dong Wang Zhao Zhang Zi-Long Zhao Yuhang Liu Yihong Chen Liwei Wang 3DPC 44 10 0 13 Sep 2022
Boundary-Aware Network for Abdominal Multi-Organ Segmentation Shishuai Hu Zehui Liao Yong-quan Xia 19 0 0 29 Aug 2022
Boundary-Aware Network for Kidney Parsing Shishuai Hu Yiwen Ye Zehui Liao Yong-quan Xia MedIm 23 2 0 29 Aug 2022
BuyTheDips: PathLoss for improved topology-preserving deep learning-based image segmentation Minh On Vu Ngoc Yizi Chen Nicolas Boutry Jonathan Fabrizio Clement Mallet 34 1 0 23 Jul 2022
Physiology-based simulation of the retinal vasculature enables annotation-free segmentation of OCT angiographs M. Menten Johannes C. Paetzold Alina F. Dima Bjoern H. Menze B. Knier Daniel Rueckert 32 15 0 22 Jul 2022
Learning Topological Interactions for Multi-Class Medical Image Segmentation Saumya Gupta Xiaoling Hu James H. Kaan Michael Jin M. Mpoy ... Tahsin M. Kurc Joel H. Saltz A. Tassiopoulos Prateek Prasanna Chao Chen 24 42 0 20 Jul 2022
Enforcing connectivity of 3D linear structures using their 2D projections Doruk Öner Hussein Osman Mateusz Koziñski Pascal Fua 35 5 0 14 Jul 2022
Metrics reloaded: Recommendations for image analysis validation Lena Maier-Hein Annika Reinke Patrick Godau M. Tizabi Florian Buettner ... Aleksei Tiulpin Sotirios A. Tsaftaris Ben Van Calster Gaël Varoquaux Paul F. Jäger 34 218 0 03 Jun 2022
Learning Probabilistic Topological Representations Using Discrete Morse Theory Xiaoling Hu Dimitris Samaras Chao Chen 24 20 0 03 Jun 2022
DTU-Net: Learning Topological Similarity for Curvilinear Structure Segmentation Manxi Lin Zahra Bashir M. Tolsgaard Anders Christensen Aasa Feragen MedIm 32 12 0 23 May 2022
Local Intensity Order Transformation for Robust Curvilinear Object Segmentation Tianyi Shi Nicolas Boutry Yongchao Xu Thierry Géraud 25 48 0 25 Feb 2022
An Analysis of the Influence of Transfer Learning When Measuring the Tortuosity of Blood Vessels Matheus V. da Silva Julie Ouellette Baptiste Lacoste C. H. Comin 29 7 0 19 Nov 2021
METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy Izabela Horvath Johannes C. Paetzold Oliver Schoppe Rami Al-Maskari Ivan Ezhov Suprosanna Shit Hongwei Bran Li Ali Ertuerk Bjoern H. Menze MedIm 31 9 0 22 Apr 2021
Do We Really Need Dice? The Hidden Region-Size Biases of Segmentation Losses Bingyuan Liu Jose Dolz Adrian Galdran Riadh Kobbi Ismail Ben Ayed 40 15 0 18 Apr 2021
Common Limitations of Image Processing Metrics: A Picture Story Annika Reinke M. Tizabi Carole H. Sudre Matthias Eisenmann Tim Radsch ... Gaël Varoquaux Manuel Wiesenfarth Ziv R. Yaniv Paul Jäger Lena Maier-Hein 24 141 0 12 Apr 2021
Tubular Shape Aware Data Generation for Semantic Segmentation in Medical Imaging I. Sirazitdinov H. Schulz A. Saalbach S. Renisch Dmitry V. Dylov MedIm 34 2 0 02 Oct 2020