TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics

9 February 2020

Alexander Tong

Jessie Huang

Guy Wolf

David van Dijk

Smita Krishnaswamy

ArXiv PDF HTML

Papers citing "TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics"

25 / 25 papers shown

Title
Minimum-Excess-Work Guidance Christopher Kolloff Tobias Höppe Emmanouil Angelis Mathias Jacob Schreiner Stefan Bauer Andrea Dittadi Simon Olsson OT 41 0 0 19 May 2025
Using Linearized Optimal Transport to Predict the Evolution of Stochastic Particle Systems Nicholas Karris Evangelos A. Nikitopoulos Ioannis G. Kevrekidis Seungjoon Lee Alexander Cloninger OT 66 0 0 10 Jan 2025
Geometry-Aware Generative Autoencoders for Warped Riemannian Metric Learning and Generative Modeling on Data Manifolds Xingzhi Sun Danqi Liao Kincaid MacDonald Yanlei Zhang Chen Liu Guillaume Huguet Guy Wolf Ian M. Adelstein Tim G. J. Rudner Smita Krishnaswamy 63 4 0 16 Oct 2024
Learning stochastic dynamics from snapshots through regularized unbalanced optimal transport Zhenyi Zhang Tiejun Li Peijie Zhou OT 169 9 0 01 Oct 2024
Implicit Dynamical Flow Fusion (IDFF) for Generative Modeling Mohammad R. Rezaei Rahul G. Krishnan Milos R. Popovic M. Lankarany DiffM 38 0 0 22 Sep 2024
Meta Flow Matching: Integrating Vector Fields on the Wasserstein Manifold Lazar Atanackovic Xi Zhang Brandon Amos Mathieu Blanchette Leo J. Lee Yoshua Bengio Alexander Tong Kirill Neklyudov 78 11 0 26 Aug 2024
Partially Observed Trajectory Inference using Optimal Transport and a Dynamics Prior Anming Gu Edward Chien Kristjan Greenewald 55 7 0 11 Jun 2024
Efficient Trajectory Inference in Wasserstein Space Using Consecutive Averaging Amartya Banerjee Harlin Lee Nir Sharon Caroline Moosmüller 50 1 0 30 May 2024
Computing high-dimensional optimal transport by flow neural networks Chen Xu Xiuyuan Cheng Yao Xie OT 59 5 0 19 May 2023
PyTorch: An Imperative Style, High-Performance Deep Learning Library Adam Paszke Sam Gross Francisco Massa Adam Lerer James Bradbury ... Sasank Chilamkurthy Benoit Steiner Lu Fang Junjie Bai Soumith Chintala ODL 91 42,038 0 03 Dec 2019
Neural SDE: Stabilizing Neural ODE Networks with Stochastic Noise Xuanqing Liu Tesi Xiao Si Si Qin Cao Sanjiv Kumar Cho-Jui Hsieh 48 134 0 05 Jun 2019
$A Direct $\tilde{O}(1/ε)$ Iteration Parallel Algorithm for Optimal Transport$ A Direct $\tilde{O}(1/ε)$ Iteration Parallel Algorithm for Optimal Transport A. Jambulapati Aaron Sidford Kevin Tian OT 16 21 0 03 Jun 2019
Subspace Detours: Building Transport Plans that are Optimal on Subspace Projections Boris Muzellec Marco Cuturi OT 34 31 0 24 May 2019
Generalized Sliced Wasserstein Distances Soheil Kolouri Kimia Nadjahi Umut Simsekli Roland Badeau Gustavo K. Rohde 21 296 0 01 Feb 2019
Scalable Unbalanced Optimal Transport using Generative Adversarial Networks Karren D. Yang Caroline Uhler GAN OT 32 75 0 26 Oct 2018
FFJORD: Free-form Continuous Dynamics for Scalable Reversible Generative Models Will Grathwohl Ricky T. Q. Chen J. Bettencourt Ilya Sutskever David Duvenaud DRL 40 861 0 02 Oct 2018
Neural Ordinary Differential Equations T. Chen Yulia Rubanova J. Bettencourt David Duvenaud AI4CE 168 5,024 0 19 Jun 2018
Computational Optimal Transport Gabriel Peyré Marco Cuturi OT 99 2,133 0 01 Mar 2018
Geometry-Based Data Generation Ofir Lindenbaum Jay S. Stanley Guy Wolf Smita Krishnaswamy 30 31 0 14 Feb 2018
Sharp asymptotic and finite-sample rates of convergence of empirical measures in Wasserstein distance Jonathan Niles-Weed Francis R. Bach 72 417 0 01 Jul 2017
Masked Autoregressive Flow for Density Estimation George Papamakarios Theo Pavlakou Iain Murray 80 1,340 0 19 May 2017
Improving Variational Inference with Inverse Autoregressive Flow Diederik P. Kingma Tim Salimans Rafal Jozefowicz Xi Chen Ilya Sutskever Max Welling BDL DRL 72 1,805 0 15 Jun 2016
Variational Inference with Normalizing Flows Danilo Jimenez Rezende S. Mohamed DRL BDL 210 4,143 0 21 May 2015
Adam: A Method for Stochastic Optimization Diederik P. Kingma Jimmy Ba ODL 316 149,474 0 22 Dec 2014
Sinkhorn Distances: Lightspeed Computation of Optimal Transportation Distances Marco Cuturi OT 78 4,210 0 04 Jun 2013