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Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets

13 June 2019

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Papers citing "Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets"

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Title
Temporal Relation Extraction in Clinical Texts: A Span-based Graph Transformer Approach Rochana Chaturvedi Peyman Baghershahi Sourav Medya Barbara Di Eugenio 104 0 0 23 Mar 2025
Can Frontier LLMs Replace Annotators in Biomedical Text Mining? Analyzing Challenges and Exploring Solutions Yichong Zhao Susumu Goto 94 0 0 05 Mar 2025
A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and Ethics Kai He Rui Mao Qika Lin Yucheng Ruan Xiang Lan Mengling Feng Min Zhang LM&MA AILaw 226 175 0 28 Jan 2025
Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models Ran Xu Hejie Cui Yue Yu Xuan Kan Wenqi Shi Yuchen Zhuang Wei Jin Joyce C. Ho Carl Yang 158 17 0 28 Jan 2025
Natural Language-Assisted Multi-modal Medication Recommendation Jie Tan Yu Rong Kangfei Zhao Tian Bian Tingyang Xu Junzhou Huang Hong Cheng Helen Meng 113 2 0 13 Jan 2025
Bridging Today and the Future of Humanity: AI Safety in 2024 and Beyond Shanshan Han 161 1 0 09 Oct 2024
Predicting drug-gene relations via analogy tasks with word embeddings Hiroaki Yamagiwa Ryoma Hashimoto Kiwamu Arakane Ken Murakami Shou Soeda Momose Oyama Yihua Zhu Mariko Okada Hidetoshi Shimodaira 175 0 0 03 Jun 2024
DeepVar: An End-to-End Deep Learning Approach for Genomic Variant Recognition in Biomedical Literature Chaoran Cheng Fei Tan Zhi Wei 69 7 0 05 Jun 2020
Publicly Available Clinical BERT Embeddings Emily Alsentzer John R. Murphy Willie Boag W. Weng Di Jin Tristan Naumann Matthew B. A. McDermott AI4MH 192 1,988 0 06 Apr 2019
Probing Biomedical Embeddings from Language Models Qiao Jin Bhuwan Dhingra William W. Cohen Xinghua Lu 67 116 0 03 Apr 2019
SciBERT: A Pretrained Language Model for Scientific Text Iz Beltagy Kyle Lo Arman Cohan 168 2,986 0 26 Mar 2019
Enhancing Clinical Concept Extraction with Contextual Embeddings Yuqi Si Jingqi Wang Hua Xu Kirk Roberts AI4MH 52 292 0 22 Feb 2019
BioBERT: a pre-trained biomedical language representation model for biomedical text mining Jinhyuk Lee Wonjin Yoon Sungdong Kim Donghyeon Kim Sunkyu Kim Chan Ho So Jaewoo Kang OOD 182 5,674 0 25 Jan 2019
Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context Zihang Dai Zhilin Yang Yiming Yang J. Carbonell Quoc V. Le Ruslan Salakhutdinov VLM 260 3,747 0 09 Jan 2019
ML-Net: multi-label classification of biomedical texts with deep neural networks Jingcheng Du Qingyu Chen Yifan Peng Yang Xiang Cui Tao Zhiyong Lu 108 139 0 13 Nov 2018
BioSentVec: creating sentence embeddings for biomedical texts Qingyu Chen Yifan Peng Zhiyong Lu 64 214 0 22 Oct 2018
BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding Jacob Devlin Ming-Wei Chang Kenton Lee Kristina Toutanova VLM SSL SSeg 1.8K 95,229 0 11 Oct 2018
CollaboNet: collaboration of deep neural networks for biomedical named entity recognition Wonjin Yoon Chan Ho So Jinhyuk Lee Jaewoo Kang 63 136 0 21 Sep 2018
Lessons from Natural Language Inference in the Clinical Domain Alexey Romanov Chaitanya P. Shivade LM&MA 85 272 0 21 Aug 2018
GLUE: A Multi-Task Benchmark and Analysis Platform for Natural Language Understanding Alex Jinpeng Wang Amanpreet Singh Julian Michael Felix Hill Omer Levy Samuel R. Bowman ELM 1.1K 7,201 0 20 Apr 2018
Attention Is All You Need Ashish Vaswani Noam M. Shazeer Niki Parmar Jakob Uszkoreit Llion Jones Aidan Gomez Lukasz Kaiser Illia Polosukhin 3DV 800 132,454 0 12 Jun 2017
Semi-supervised sequence tagging with bidirectional language models Matthew E. Peters Bridger Waleed Ammar Chandra Bhagavatula Russell Power 97 635 0 29 Apr 2017
Neural Architectures for Named Entity Recognition Guillaume Lample Miguel Ballesteros Sandeep Subramanian Kazuya Kawakami Chris Dyer 228 4,018 0 04 Mar 2016
The Role of Context Types and Dimensionality in Learning Word Embeddings Oren Melamud David McClosky Siddharth Patwardhan Joey Tianyi Zhou 100 123 0 05 Jan 2016
Bidirectional LSTM-CRF Models for Sequence Tagging Zhiheng Huang Wenyuan Xu Kai Yu 186 4,033 0 09 Aug 2015