Strategies for Pre-training Graph Neural Networks

29 May 2019

Papers citing "Strategies for Pre-training Graph Neural Networks"

50 / 300 papers shown

Title
Implicit Geometry and Interaction Embeddings Improve Few-Shot Molecular Property Prediction Christopher Fifty Joseph M. Paggi Ehsan Amid J. Leskovec R. Dror AI4CE 25 0 0 04 Feb 2023
Predicting Molecule-Target Interaction by Learning Biomedical Network and Molecule Representations Jinjiang Guo Jie Li 27 0 0 02 Feb 2023
Knowledge Distillation on Graphs: A Survey Yijun Tian Shichao Pei Xiangliang Zhang Chuxu Zhang Nitesh Chawla 26 28 0 01 Feb 2023
SeeGera: Self-supervised Semi-implicit Graph Variational Auto-encoders with Masking Xiang Li Tiandi Ye Caihua Shan Dongsheng Li Ming Gao SSL 36 30 0 29 Jan 2023
HAT-GAE: Self-Supervised Graph Auto-encoders with Hierarchical Adaptive Masking and Trainable Corruption Chengyu Sun SSL 34 1 0 28 Jan 2023
Visiting Distant Neighbors in Graph Convolutional Networks Ali Hashemi H. Makse GNN 24 1 0 26 Jan 2023
CrysGNN : Distilling pre-trained knowledge to enhance property prediction for crystalline materials Kishalay Das Bidisha Samanta Pawan Goyal Seung-Cheol Lee S. Bhattacharjee Niloy Ganguly 23 17 0 14 Jan 2023
Conditional Diffusion Based on Discrete Graph Structures for Molecular Graph Generation Han Huang Leilei Sun Bowen Du Weifeng Lv 54 40 0 01 Jan 2023
A Generalization of ViT/MLP-Mixer to Graphs Xiaoxin He Bryan Hooi T. Laurent Adam Perold Yann LeCun Xavier Bresson 47 88 0 27 Dec 2022
Multi-modal Molecule Structure-text Model for Text-based Retrieval and Editing Shengchao Liu Weili Nie Chengpeng Wang Jiarui Lu Zhuoran Qiao Ling Liu Jian Tang Chaowei Xiao Anima Anandkumar 48 153 0 21 Dec 2022
Data Augmentation on Graphs: A Technical Survey Jiajun Zhou Chenxuan Xie Shengbo Gong Z. Wen Xiangyu Zhao Qi Xuan Xiaoniu Yang AI4TS 34 8 0 20 Dec 2022
Mul-GAD: a semi-supervised graph anomaly detection framework via aggregating multi-view information Zhiyuan Liu Chunjie Cao Jingzhang Sun 24 9 0 11 Dec 2022
Augmenting Knowledge Transfer across Graphs Yuzhen Mao Jianhui Sun Dawei Zhou 38 1 0 09 Dec 2022
Graph Learning Indexer: A Contributor-Friendly and Metadata-Rich Platform for Graph Learning Benchmarks Jiaqi Ma Xingjian Zhang Hezheng Fan Jin Huang Tianyue Li Tinghong Li Yiwen Tu Chen Zhu Qiaozhu Mei 40 5 0 08 Dec 2022
Self-supervised Graph Representation Learning for Black Market Account Detection Zequan Xu Lianyun Li Hui Li Qihang Sun Shaofeng Hu Rongrong Ji 21 1 0 06 Dec 2022
Component Segmentation of Engineering Drawings Using Graph Convolutional Networks Wentai Zhang Joe Joseph Yueyan Yin Liuyue Xie T. Furuhata Soji Yamakawa Kenji Shimada L. Kara 38 12 0 01 Dec 2022
Coordinating Cross-modal Distillation for Molecular Property Prediction Hao Zhang N. Zhang Ruixin Zhang Lei Shen Yingyi Zhang Meng Liu 28 1 0 30 Nov 2022
Capturing long-range interaction with reciprocal space neural network Hongyu Yu Liangliang Hong Shiyou Chen X. Gong Hongjun Xiang 34 11 0 30 Nov 2022
BARTSmiles: Generative Masked Language Models for Molecular Representations Gayane Chilingaryan Hovhannes Tamoyan Ani Tevosyan N. Babayan L. Khondkaryan Karen Hambardzumyan Zaven Navoyan Hrant Khachatrian Armen Aghajanyan SSL 40 25 0 29 Nov 2022
Supervised Pretraining for Molecular Force Fields and Properties Prediction Xiang Gao Weihao Gao Wen Xiao Zhirui Wang Chong Wang Liang Xiang AI4CE 36 8 0 23 Nov 2022
Deep learning methods for drug response prediction in cancer: predominant and emerging trends A. Partin Thomas Brettin Yitan Zhu Oleksandr Narykov Austin R. Clyde Jamie Overbeek Department of Materials Science 29 54 0 18 Nov 2022
Self-Supervised Graph Structure Refinement for Graph Neural Networks Jianan Zhao Qianlong Wen Mingxuan Ju Chuxu Zhang Yanfang Ye 45 20 0 12 Nov 2022
Flaky Performances when Pretraining on Relational Databases Shengchao Liu David Vazquez Jian Tang Pierre-Andre Noel 34 2 0 09 Nov 2022
Reducing Down(stream)time: Pretraining Molecular GNNs using Heterogeneous AI Accelerators Jenna A. Bilbrey Kristina M Herman Henry W Sprueill Soritis S. Xantheas Payel Das Manuel Lopez Roldan Mike Kraus Hatem Helal Sutanay Choudhury AI4CE 21 4 0 08 Nov 2022
MolE: a molecular foundation model for drug discovery Oscar Méndez-Lucio C. Nicolaou Berton Earnshaw 17 11 0 03 Nov 2022
A 3D-Shape Similarity-based Contrastive Approach to Molecular Representation Learning Austin O. Atsango N. Diamant Ziqing Lu Tommaso Biancalani Gabriele Scalia Kangway V Chuang 35 2 0 03 Nov 2022
Boosting the Cycle Counting Power of Graph Neural Networks with I $^2$ -GNNs Yinan Huang Xingang Peng Jianzhu Ma Muhan Zhang 84 46 0 22 Oct 2022
Privacy-Preserved Neural Graph Similarity Learning Yupeng Hou Wayne Xin Zhao Yaliang Li Ji-Rong Wen 38 1 0 21 Oct 2022
PEMP: Leveraging Physics Properties to Enhance Molecular Property Prediction Yuancheng Sun Yimeng Chen Weizhi Ma Wenhao Huang Kang Liu Zhiming Ma Wei-Ying Ma Yanyan Lan 31 7 0 18 Oct 2022
Injecting Domain Knowledge from Empirical Interatomic Potentials to Neural Networks for Predicting Material Properties Zeren Shui Daniel S. Karls Mingjian Wen Ilia Nikiforov E. Tadmor George Karypis 46 7 0 14 Oct 2022
A Comprehensive Study on Large-Scale Graph Training: Benchmarking and Rethinking Keyu Duan Zirui Liu Peihao Wang Wenqing Zheng Kaixiong Zhou Tianlong Chen Xia Hu Zhangyang Wang GNN 43 57 0 14 Oct 2022
Boosting Graph Neural Networks via Adaptive Knowledge Distillation Zhichun Guo Chunhui Zhang Yujie Fan Yijun Tian Chuxu Zhang Nitesh Chawla 26 32 0 12 Oct 2022
Augmentations in Hypergraph Contrastive Learning: Fabricated and Generative Tianxin Wei Yuning You Tianlong Chen Yang Shen Jingrui He Zhangyang Wang 41 45 0 07 Oct 2022
Revisiting Graph Contrastive Learning from the Perspective of Graph Spectrum Nian Liu Xiao Wang Deyu Bo Chuan Shi Jian Pei 25 62 0 05 Oct 2022
Automated Graph Self-supervised Learning via Multi-teacher Knowledge Distillation Lirong Wu Yufei Huang Haitao Lin Zicheng Liu Tianyu Fan Stan Z. Li SSL 61 5 0 05 Oct 2022
DDoS: A Graph Neural Network based Drug Synergy Prediction Algorithm Kyriakos Schwarz A. Pliego-Mendieta Amina Mollaysa Lara Planas-Paz C. Pauli Ahmed Allam Michael Krauthammer GNN 34 2 0 03 Oct 2022
Spectral Augmentation for Self-Supervised Learning on Graphs Lu Lin Jinghui Chen Hongning Wang OOD 42 49 0 02 Oct 2022
MLPInit: Embarrassingly Simple GNN Training Acceleration with MLP Initialization Xiaotian Han Tong Zhao Yozen Liu Xia Hu Neil Shah GNN 63 36 0 30 Sep 2022
Universal Prompt Tuning for Graph Neural Networks Taoran Fang Yunchao Zhang Yang Yang Chunping Wang Lei Chen 36 50 0 30 Sep 2022
LogGD:Detecting Anomalies from System Logs by Graph Neural Networks Yongzhen Xie Hongyu Zhang M. Babar AI4TS 23 20 0 16 Sep 2022
Graph Contrastive Learning with Cross-view Reconstruction Qianlong Wen Z. Ouyang Chunhui Zhang Y. Qian Yanfang Ye Chuxu Zhang SSL 27 6 0 16 Sep 2022
A Molecular Multimodal Foundation Model Associating Molecule Graphs with Natural Language Fuchun Sun Dazhao Du Zhao-Qing Yang Yujie Zhou Jiangmeng Li Anyi Rao Haoran Sun Zhiwu Lu Ji-Rong Wen 58 108 0 12 Sep 2022
ChemBERTa-2: Towards Chemical Foundation Models Walid Ahmad Elana Simon Seyone Chithrananda Gabriel Grand Bharath Ramsundar AI4CE 28 129 0 05 Sep 2022
LogLG: Weakly Supervised Log Anomaly Detection via Log-Event Graph Construction Hongcheng Guo Yu Guo Renjie Chen Jian Yang Jiaheng Liu Zhoujun Li Tieqiao Zheng Weichao Hou Liangfan Zheng Bo Zhang 26 14 0 23 Aug 2022
MentorGNN: Deriving Curriculum for Pre-Training GNNs Dawei Zhou Lecheng Zheng Dongqi Fu Jiawei Han Jingrui He 33 22 0 21 Aug 2022
Graph Neural Network Based Node Deployment for Throughput Enhancement Yifei Yang Dongmian Zou Xiaofan He 21 5 0 19 Aug 2022
GraphTTA: Test Time Adaptation on Graph Neural Networks Guan-Wun Chen Jiying Zhang Xi Xiao Yong Li OOD 38 10 0 19 Aug 2022
Analyzing Data-Centric Properties for Graph Contrastive Learning Puja Trivedi Ekdeep Singh Lubana Mark Heimann Danai Koutra Jayaraman J. Thiagarajan 30 11 0 04 Aug 2022
Unsupervised pre-training of graph transformers on patient population graphs Chantal Pellegrini Nassir Navab Anees Kazi MedIm AI4CE 46 11 0 21 Jul 2022
SVGraph: Learning Semantic Graphs from Instructional Videos Madeline Chantry Schiappa Yogesh S Rawat 17 4 0 16 Jul 2022