3D Whole Brain Segmentation using Spatially Localized Atlas Network Tiles

28 March 2019

Yuankai Huo

Bennett A. Landman

Papers citing "3D Whole Brain Segmentation using Spatially Localized Atlas Network Tiles"

50 / 55 papers shown

Title
Point Cloud-based Grasping for Soft Hand Exoskeleton Chen Hu Enrica Tricomi Eojin Rho Daekyum Kim L. Masia Shan Luo Letizia Gionfrida 38 0 0 04 Apr 2025
ECLARE: Efficient cross-planar learning for anisotropic resolution enhancement Samuel W. Remedios Shuwen Wei Shuo Han Jinwei Zhang A. Carass K. Schilling D. L. Pham Jerry L. Prince Blake E Dewey 48 0 0 14 Mar 2025
Brain age identification from diffusion MRI synergistically predicts neurodegenerative disease Chenyu Gao Michael E. Kim Karthik Ramadass Praitayini Kanakaraj Aravind Krishnan ... Shunxing Bao N. Khairi Zhiyuan Li Christos Davatzikos Bennett A. Landman DiffM MedIm 47 0 0 21 Feb 2025
Scalable, reproducible, and cost-effective processing of large-scale medical imaging datasets Michael E. Kim Karthik Ramadass Chenyu Gao Praitayini Kanakaraj N. Newlin ... Timothy J. Hohman Zhiyuan Li Shunxing Bao Bennett A. Landman N. Khairi 21 4 0 26 Aug 2024
Vector Field Attention for Deformable Image Registration Yihao Liu Junyu Chen Lianrui Zuo A. Carass Jerry L. Prince 31 4 0 14 Jul 2024
MRSegmentator: Robust Multi-Modality Segmentation of 40 Classes in MRI and CT Sequences Hartmut Häntze Lina Xu Felix J. Dorfner Leonhard Donle Daniel Truhn ... Mathias Prokop Bram van Ginneken Alessa Hering Lisa Christine Adams Keno K. Bressem 49 1 0 10 May 2024
Label merge-and-split: A graph-colouring approach for memory-efficient brain parcellation A. Kujawa R. Dorent Sebastien Ourselin Tom Kamiel Magda Vercauteren VLM 29 0 0 16 Apr 2024
Region-based U-net for accelerated training and enhanced precision in deep brain segmentation Mengyu Li Magnus Magnusson T. Eimeren L. M. Ellingsen 21 1 0 14 Mar 2024
Neural deformation fields for template-based reconstruction of cortical surfaces from MRI Fabian Bongratz Anne-Marie Rickmann Christian Wachinger 33 11 0 23 Jan 2024
DeepCERES: A Deep learning method for cerebellar lobule segmentation using ultra-high resolution multimodal MRI Sergio Morell-Ortega Marina Ruiz-Perez Marien Gadea Roberto Vivó Hernando Gregorio Rubio F. Aparici-Robles M. Iglesia-Vayá G. Catheline Pierrick Coupé J. V. Manjón 20 4 0 22 Jan 2024
VINNA for Neonates -- Orientation Independence through Latent Augmentations Leonie Henschel David Kügler Lilla Zöllei Martin Reuter 37 2 0 29 Nov 2023
Predicting Age from White Matter Diffusivity with Residual Learning Chenyu Gao Michael E. Kim Ho Hin Lee Qi Yang N. Khairi ... Katherine D. Van Schaik K. Schilling Daniel Moyer Ivana Isgum Bennett A. Landman MedIm 20 2 0 06 Nov 2023
Abdominal multi-organ segmentation in CT using Swinunter Mingjin Chen Yongkang He Yongyi Lu ViT OOD MedIm 18 0 0 28 Sep 2023
Enhancing Hierarchical Transformers for Whole Brain Segmentation with Intracranial Measurements Integration Xin Yu Yucheng Tang Qi Yang Ho Hin Lee Shunxing Bao Yuankai Huo Bennett A. Landman 16 1 0 08 Sep 2023
A survey on deep learning in medical image registration: new technologies, uncertainty, evaluation metrics, and beyond Junyu Chen Yihao Liu Shuwen Wei Zhangxing Bian Shalini Subramanian A. Carass Jerry L. Prince Yong Du OOD 45 36 0 28 Jul 2023
Automated computed tomography and magnetic resonance imaging segmentation using deep learning: a beginner's guide Diedre Carmo G. Pinheiro Lívia Rodrigues Thays Abreu R. Lotufo Letícia Rittner OOD 40 4 0 12 Apr 2023
A Unified Learning Model for Estimating Fiber Orientation Distribution Functions on Heterogeneous Multi-shell Diffusion-weighted MRI Tianyuan Yao N. Newlin Praitayini Kanakaraj V. Nath L. Cai Karthik Ramadass K. Schilling Bennett A. Landman Yuankai Huo 28 3 0 29 Mar 2023
A latent space for unsupervised MR image quality control via artifact assessment Lianrui Zuo Yuan Xue Blake E Dewey Yihao Liu Jerry L. Prince A. Carass 21 3 0 01 Feb 2023
Segmenting thalamic nuclei from manifold projections of multi-contrast MRI Chang Yan Muhan Shao Zhangxing Bian Anqi Feng Yuan Xue J. Zhuo R. Gullapalli A. Carass Jerry L. Prince 15 5 0 15 Jan 2023
I2F: A Unified Image-to-Feature Approach for Domain Adaptive Semantic Segmentation Haoyu Ma Xiangru Lin Yizhou Yu 141 14 0 03 Jan 2023
HACA3: A Unified Approach for Multi-site MR Image Harmonization Lianrui Zuo Yihao Liu Yuan Xue Blake E Dewey Samuel W. Remedios ... S. Newsome P. Calabresi Susan M. Resnick Jerry L. Prince A. Carass MedIm 16 23 0 12 Dec 2022
Deep Grading based on Collective Artificial Intelligence for AD Diagnosis and Prognosis H. Nguyen Michael Clement Boris Mansencal Pierrick Coupé 13 3 0 28 Nov 2022
Fighting the scanner effect in brain MRI segmentation with a progressive level-of-detail network trained on multi-site data M. Svanera Mattia Savardi A. Signoroni Sergio Benini L. Muckli 21 3 0 04 Nov 2022
Emotional Brain State Classification on fMRI Data Using Deep Residual and Convolutional Networks Maxime Tchibozo Donggeun Kim Zijing Wang Xiaofu He 19 0 0 31 Oct 2022
UNesT: Local Spatial Representation Learning with Hierarchical Transformer for Efficient Medical Segmentation Xin Yu Qi Yang Yinchi Zhou L. Cai Riqiang Gao ... R. Abramson Zizhao Zhang Yuankai Huo Bennett A. Landman Yucheng Tang ViT MedIm 42 0 0 28 Sep 2022
Joint Reconstruction and Parcellation of Cortical Surfaces Anne-Marie Rickmann Fabian Bongratz Sebastian Polsterl Ignacio Sarasua Christian Wachinger 3DV 21 1 0 19 Sep 2022
FAST-AID Brain: Fast and Accurate Segmentation Tool using Artificial Intelligence Developed for Brain Mostafa Mehdipour-Ghazi Mads Nielsen OOD 30 11 0 30 Aug 2022
TBI-GAN: An Adversarial Learning Approach for Data Synthesis on Traumatic Brain Segmentation Xiangyun Zhao Di Zang Sheng Wang Zhenrong Shen Kai Xuan ... Xuehai Wu Zheren Li Qian Wang Zengxin Qi Lichi Zhang MedIm 22 2 0 12 Aug 2022
Identifying and Combating Bias in Segmentation Networks by leveraging multiple resolutions Leonie Henschel David Kügler D. Andrews C. Nordahl M. Reuter 24 0 0 29 Jun 2022
Pseudo-Label Guided Multi-Contrast Generalization for Non-Contrast Organ-Aware Segmentation Ho Hin Lee Yucheng Tang Riqiang Gao Qi Yang Xin Yu Shunxing Bao J. Terry J. Carr Yuankai Huo Bennett A. Landman 24 1 0 12 May 2022
Vox2Cortex: Fast Explicit Reconstruction of Cortical Surfaces from 3D MRI Scans with Geometric Deep Neural Networks Fabian Bongratz Anne-Marie Rickmann Sebastian Polsterl Christian Wachinger 3DV 30 32 0 17 Mar 2022
Coordinate Translator for Learning Deformable Medical Image Registration Yihao Liu Lianrui Zuo Shuo Han Yuan Xue Jerry L. Prince A. Carass MedIm 21 38 0 05 Mar 2022
Anomaly Detection-Inspired Few-Shot Medical Image Segmentation Through Self-Supervision With Supervoxels Stine Hansen Srishti Gautam Robert Jenssen Michael C. Kampffmeyer 18 84 0 03 Mar 2022
Swin UNETR: Swin Transformers for Semantic Segmentation of Brain Tumors in MRI Images Ali Hatamizadeh V. Nath Yucheng Tang Dong Yang H. Roth Daguang Xu ViT MedIm 21 1,059 0 04 Jan 2022
FastSurferVINN: Building Resolution-Independence into Deep Learning Segmentation Methods -- A Solution for HighRes Brain MRI Leonie Henschel David Kügler M. Reuter 35 42 0 17 Dec 2021
Factorisation-based Image Labelling Yu-ji Yan Yael Balbastre Mikael Brudfors John Ashburner MedIm DiffM 11 6 0 19 Nov 2021
Whole Brain Segmentation with Full Volume Neural Network Yeshu Li Jianwei Cui Yilun Sheng Xiao Liang Jingdong Wang E. Chang Yan Xu 32 11 0 29 Oct 2021
Joint Registration and Segmentation via Multi-Task Learning for Adaptive Radiotherapy of Prostate Cancer M. Elmahdy Laurens Beljaards Sahar Yousefi Hessam Sokooti F. Verbeek U. A. van der Heide Marius Staring 24 20 0 05 May 2021
Coarse-to-Fine Domain Adaptive Semantic Segmentation with Photometric Alignment and Category-Center Regularization Haoyu Ma Xiangru Lin Zifeng Wu Yizhou Yu 11 70 0 24 Mar 2021
Multi-Contrast Computed Tomography Healthy Kidney Atlas Ho Hin Lee Yucheng Tang Kaiwen Xu Shunxing Bao Agnes B. Fogo ... M. Caestecker Mattias P. Heinrich J. Spraggins Yuankai Huo Bennett A. Landman 18 0 0 23 Dec 2020
DeepLesionBrain: Towards a broader deep-learning generalization for multiple sclerosis lesion segmentation R. A. Kamraoui Vinh-Thong Ta T. Tourdias Boris Mansencal J. V. Manjón Pierrick Coupé OOD 31 50 0 14 Dec 2020
Joint analysis of structural connectivity and cortical surface features: correlates with mild traumatic brain injury Cailey I. Kerley L. Cai Chang Yu Logan M. Crawford Jason M. Elenberger Eden S. Singh K. Schilling Katherine Aboud Bennett A. Landman T. Rex 20 2 0 18 Nov 2020
Learning Anatomical Segmentations for Tractography from Diffusion MRI Christian Ewert David Kügler A. Yendiki M. Reuter MedIm 13 1 0 09 Sep 2020
Multi-modal segmentation of 3D brain scans using neural networks Jonathan Zopes Moritz Platscher S. Paganucci C. Federau 20 11 0 11 Aug 2020
A review of deep learning in medical imaging: Imaging traits, technology trends, case studies with progress highlights, and future promises S. Kevin Zhou H. Greenspan Christos Davatzikos James S. Duncan Bram van Ginneken A. Madabhushi Jerry L. Prince Daniel Rueckert Ronald M. Summers 55 624 0 02 Aug 2020
Multi-Site Infant Brain Segmentation Algorithms: The iSeg-2019 Challenge Yue Sun Kun Gao Zhengwang Wu Zhihao Lei Ying Wei ... Weili Lin V. Jewells Gang Li D. Shen L. Wang 25 71 0 04 Jul 2020
3D Deep Learning on Medical Images: A Review S. Singh Lipo Wang Sukrit Gupta Haveesh Goli P. Padmanabhan Balázs Gulyás MedIm 13 417 0 01 Apr 2020
ACEnet: Anatomical Context-Encoding Network for Neuroanatomy Segmentation Yuemeng Li Hongming Li Yong-Xian Fan 3DPC 35 27 0 13 Feb 2020
AssemblyNet: A large ensemble of CNNs for 3D Whole Brain MRI Segmentation Pierrick Coupé Boris Mansencal Michael Clement Rémi Giraud B. D. D. Senneville T. Thong Vincent Lepetit J. V. Manjón 33 109 0 20 Nov 2019
DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation Aakash Kaku Chaitra V. Hegde Jeffrey R. Huang Sohae Chung X. Wang Matthew Young A. Radmanesh Yvonne W. Lui N. Razavian 8 20 0 13 Nov 2019