ScispaCy: Fast and Robust Models for Biomedical Natural Language Processing

20 February 2019

Papers citing "ScispaCy: Fast and Robust Models for Biomedical Natural Language Processing"

50 / 81 papers shown

Title
Integration of Large Language Models and Traditional Deep Learning for Social Determinants of Health Prediction Paul Landes Jimeng Sun Adam Cross 33 0 0 06 May 2025
Tabular Embeddings for Tables with Bi-Dimensional Hierarchical Metadata and Nesting Gyanendra Shrestha Chutain Jiang Sai Akula Vivek Yannam Anna Pyayt Michael Gubanov LMTD 97 0 0 20 Feb 2025
Recognize Any Surgical Object: Unleashing the Power of Weakly-Supervised Data Jiajie Li Brian R Quaranto Chenhui Xu Ishan Mishra Ruiyang Qin Dancheng Liu Peter C W Kim Jinjun Xiong 94 0 0 25 Jan 2025
MEG: Medical Knowledge-Augmented Large Language Models for Question Answering Laura Cabello Carmen Martin-Turrero Uchenna Akujuobi Anders Søgaard Carlos Bobed AI4MH 151 1 0 06 Nov 2024
Disease Entity Recognition and Normalization is Improved with Large Language Model Derived Synthetic Normalized Mentions Kuleen Sasse Shinjitha Vadlakonda Richard Kennedy J. D. Osborne AI4CE 31 0 0 10 Oct 2024
Leveraging Social Determinants of Health in Alzheimer's Research Using LLM-Augmented Literature Mining and Knowledge Graphs Tianqi Shang Shu Yang Weiqing He Tianhua Zhai Dawei Li Bojian Hou Tianlong Chen Jason H. Moore M. Ritchie Li Shen 55 1 0 04 Oct 2024
A Survey of Deep Learning-based Radiology Report Generation Using Multimodal Data Xinyi Wang Grazziela Figueredo Ruizhe Li W. Zhang Weitong Chen Xin Chen MedIm ViT 49 2 0 21 May 2024
Automated Radiology Report Generation: A Review of Recent Advances Phillip Sloan Philip Clatworthy Edwin Simpson Majid Mirmehdi 32 17 0 17 May 2024
Accelerating Medical Knowledge Discovery through Automated Knowledge Graph Generation and Enrichment Mutahira Khalid Raihana Rahman Asim Abbas Sushama Kumari Iram Wajahat S. Bukhari 14 2 0 21 Apr 2024
Semantic Textual Similarity Assessment in Chest X-ray Reports Using a Domain-Specific Cosine-Based Metric Sayeh Gholipour Picha D. Chanti A. Caplier 44 2 0 19 Feb 2024
An Information Retrieval and Extraction Tool for Covid-19 Related Papers Marcos V. L. Pivetta 18 0 0 20 Jan 2024
Mindful Explanations: Prevalence and Impact of Mind Attribution in XAI Research Susanne Hindennach Lei Shi Filip Miletić Andreas Bulling 10 4 0 19 Dec 2023
A Systematic Review of Deep Learning-based Research on Radiology Report Generation Chang Liu Yuanhe Tian Yan Song MedIm 34 15 0 23 Nov 2023
MC-DRE: Multi-Aspect Cross Integration for Drug Event/Entity Extraction Jie Yang S. Han Siqu Long Josiah Poon Goran Nenadic 45 0 0 12 Aug 2023
Scaling Clinical Trial Matching Using Large Language Models: A Case Study in Oncology Cliff Wong Sheng Zhang Yu Gu C. Moung Jacob Abel ... R. Weerasinghe B. Piening Tristan Naumann Carlo Bifulco Hoifung Poon LM&MA 11 35 0 04 Aug 2023
Linguistic representations for fewer-shot relation extraction across domains Sireesh Gururaja Ritam Dutt Ting-gen Liao Carolyn Rose 31 11 0 07 Jul 2023
Prediction of COVID-19 Patients' Emergency Room Revisit using Multi-Source Transfer Learning Yuelyu Ji Yuhe Gao Runxue Bao Qi Li Di Liu Yiming Sun Ye Ye OOD 24 19 0 29 Jun 2023
Quilt-1M: One Million Image-Text Pairs for Histopathology Wisdom O. Ikezogwo M. S. Seyfioglu Fatemeh Ghezloo Dylan Stefan Chan Geva Fatwir Sheikh Mohammed Pavan Kumar Anand Ranjay Krishna Linda G. Shapiro CLIP VLM 139 114 0 20 Jun 2023
Using Natural Language Processing and Networks to Automate Structured Literature Reviews: An Application to Farmers Climate Change Adaptation Sofia Gil‐Clavel T. Filatova 13 1 0 16 Jun 2023
Building a Corpus for Biomedical Relation Extraction of Species Mentions Oumaima El Khettari Solen Quiniou Samuel Chaffron 18 2 0 14 Jun 2023
RadLing: Towards Efficient Radiology Report Understanding Rikhiya Ghosh Sanjeev Kumar Karn Manuela Danu Larisa Micu Ramya Vunikili Oladimeji Farri MedIm 26 6 0 04 Jun 2023
SciMON: Scientific Inspiration Machines Optimized for Novelty Qingyun Wang Doug Downey Heng Ji Tom Hope LLMAG 37 61 0 23 May 2023
Enhancing Small Medical Learners with Privacy-preserving Contextual Prompting Xinlu Zhang Shiyang Li Xianjun Yang Chenxin Tian Yao Qin Linda R. Petzold 24 9 0 22 May 2023
BactInt: A domain driven transfer learning approach and a corpus for extracting inter-bacterial interactions from biomedical text K. D. Baksi Vatsala Pokhrel Bhusan K. Kuntal S. Mande 16 0 0 27 Apr 2023
An Entity-based Claim Extraction Pipeline for Real-world Biomedical Fact-checking Amelie Wuhrl Lara Grimminger Roman Klinger MedIm 22 4 0 11 Apr 2023
End-to-End Models for Chemical-Protein Interaction Extraction: Better Tokenization and Span-Based Pipeline Strategies Xu-Xia Ai Ramakanth Kavuluru 27 5 0 03 Apr 2023
Applying unsupervised keyphrase methods on concepts extracted from discharge sheets Hoda Memarzadeh Nasser Ghadiri Matthias Samwald Maryam Lotfi Shahreza 36 0 0 15 Mar 2023
Knowledge-enhanced Visual-Language Pre-training on Chest Radiology Images Xiaoman Zhang Chaoyi Wu Ya Zhang Yanfeng Wang Weidi Xie MedIm 44 120 0 27 Feb 2023
Bioformer: an efficient transformer language model for biomedical text mining Li Fang Qingyu Chen Chih-Hsuan Wei Zhiyong Lu Kai Wang MedIm AI4CE 32 18 0 03 Feb 2023
MED-SE: Medical Entity Definition-based Sentence Embedding Hyeonbin Hwang Haanju Yoo Yera Choi MedIm 34 0 0 09 Dec 2022
G-MAP: General Memory-Augmented Pre-trained Language Model for Domain Tasks Zhongwei Wan Yichun Yin Wei Zhang Jiaxin Shi Lifeng Shang Guangyong Chen Xin Jiang Qun Liu VLM CLL 36 16 0 07 Dec 2022
Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework Wonjin Yoon Richard Jackson Elliot Ford V. Poroshin Jaewoo Kang 23 3 0 01 Dec 2022
CCS Explorer: Relevance Prediction, Extractive Summarization, and Named Entity Recognition from Clinical Cohort Studies Irfan Al-Hussaini D. An Albert Lee Sarah Bi Cassie S. Mitchell 9 7 0 01 Nov 2022
Making Science Simple: Corpora for the Lay Summarisation of Scientific Literature Tomas Goldsack Zhihao Zhang Chenghua Lin Carolina Scarton 23 74 0 18 Oct 2022
"More Than Words": Linking Music Preferences and Moral Values Through Lyrics Vjosa Preniqi Kyriaki Kalimeri C. Saitis 17 8 0 02 Sep 2022
Improving the Faithfulness of Abstractive Summarization via Entity Coverage Control Haopeng Zhang Semih Yavuz Wojciech Kry'sciñski Kazuma Hashimoto Yingbo Zhou HILM 35 34 0 05 Jul 2022
Keyword Extraction in Scientific Documents Susie Xi Rao Piriyakorn Piriyatamwong P. Ghoshal Sara Nasirian Emmanuel de Salis Sandra Mitrović Michael Wechner Vanya Brucker P. Egger Ce Zhang 24 3 0 05 Jul 2022
Constructing Cross-lingual Consumer Health Vocabulary with Word-Embedding from Comparable User Generated Content Chia-Hsuan Chang Lei Wang Christopher C. Yang 29 1 0 23 Jun 2022
Large-Scale Multi-Document Summarization with Information Extraction and Compression Ning Wang Han Liu Diego Klabjan 33 1 0 01 May 2022
CoVERT: A Corpus of Fact-checked Biomedical COVID-19 Tweets I. Mohr Amelie Wuhrl Roman Klinger OffRL 18 26 0 26 Apr 2022
EHRKit: A Python Natural Language Processing Toolkit for Electronic Health Record Texts Irene Z Li Keen You Yujie Qiao Lucas Huang Chia-Chun Hsieh Benjamin Rosand Xiangru Tang Dragomir R. Radev 42 4 0 13 Apr 2022
Entity-driven Fact-aware Abstractive Summarization of Biomedical Literature Amanuel Alambo Tanvi Banerjee K. Thirunarayan M. Raymer MedIm 15 7 0 30 Mar 2022
Generating Scientific Claims for Zero-Shot Scientific Fact Checking Dustin Wright David Wadden Kyle Lo Bailey Kuehl Arman Cohan Isabelle Augenstein Lucy Lu Wang MedIm 47 54 0 24 Mar 2022
Paper Plain: Making Medical Research Papers Approachable to Healthcare Consumers with Natural Language Processing Tal August Lucy Lu Wang Jonathan Bragg Marti A. Hearst Andrew Head Kyle Lo 20 40 0 28 Feb 2022
Predicting Patient Readmission Risk from Medical Text via Knowledge Graph Enhanced Multiview Graph Convolution Qiuhao Lu Thien Huu Nguyen Dejing Dou 33 19 0 19 Dec 2021
Fine-Tuning Large Neural Language Models for Biomedical Natural Language Processing Robert Tinn Hao Cheng Yu Gu Naoto Usuyama Xiaodong Liu Tristan Naumann Jianfeng Gao Hoifung Poon LM&MA 17 111 0 15 Dec 2021
Literature-Augmented Clinical Outcome Prediction Aakanksha Naik Sravanthi Parasa Sergey Feldman Lucy Lu Wang Tom Hope LM&MA 20 25 0 16 Nov 2021
Discovering Drug-Target Interaction Knowledge from Biomedical Literature Yutai Hou Yingce Xia Lijun Wu Shufang Xie Yang Fan Jinhua Zhu Wanxiang Che Tao Qin Tie-Yan Liu 25 14 0 27 Sep 2021
Improving Joint Learning of Chest X-Ray and Radiology Report by Word Region Alignment Zhanghexuan Ji Mohammad Abuzar Shaikh Dana Moukheiber S. Srihari Yifan Peng Mingchen Gao SSL 16 20 0 04 Sep 2021
Semi-Supervised Exaggeration Detection of Health Science Press Releases Dustin Wright Isabelle Augenstein 30 12 0 30 Aug 2021