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nnU-Net: Self-adapting Framework for U-Net-Based Medical Image
  Segmentation

nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentation

27 September 2018
Fabian Isensee
Jens Petersen
André Klein
David Zimmerer
Paul F. Jaeger
Simon A. A. Kohl
Jakob Wasserthal
Gregor Koehler
T. Norajitra
Sebastian J. Wirkert
Klaus H. Maier-Hein
    SSeg
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Papers citing "nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentation"

50 / 99 papers shown
Title
A Novel Hybrid Approach for Retinal Vessel Segmentation with Dynamic Long-Range Dependency and Multi-Scale Retinal Edge Fusion Enhancement
A Novel Hybrid Approach for Retinal Vessel Segmentation with Dynamic Long-Range Dependency and Multi-Scale Retinal Edge Fusion Enhancement
Yihao Ouyang
Xunheng Kuang
Mengjia Xiong
Zhida Wang
Yuanquan Wang
46
0
0
18 Apr 2025
3D Reconstruction of Shoes for Augmented Reality
3D Reconstruction of Shoes for Augmented Reality
Pratik Shrestha
Sujan Kapali
Swikar Gautam
Vishal Pokharel
Santosh Giri
64
0
0
29 Jan 2025
GAMED-Snake: Gradient-aware Adaptive Momentum Evolution Deep Snake Model for Multi-organ Segmentation
GAMED-Snake: Gradient-aware Adaptive Momentum Evolution Deep Snake Model for Multi-organ Segmentation
Ruicheng Zhang
Haowei Guo
Zeyu Zhang
Puxin Yan
Shen Zhao
81
5
0
22 Jan 2025
Guiding the classification of hepatocellular carcinoma on 3D CT-scans using deep and handcrafted radiological features
Guiding the classification of hepatocellular carcinoma on 3D CT-scans using deep and handcrafted radiological features
E. Sarfati
A. Bône
M-M. Rohé
C. Aubé
M. Ronot
P. Gori
I. Bloch
62
0
0
14 Jan 2025
Advancing Medical Image Segmentation: Morphology-Driven Learning with
  Diffusion Transformer
Advancing Medical Image Segmentation: Morphology-Driven Learning with Diffusion Transformer
Sungmin Kang
Jaeha Song
Jihie Kim
MedIm
36
2
0
01 Aug 2024
SAM Fewshot Finetuning for Anatomical Segmentation in Medical Images
SAM Fewshot Finetuning for Anatomical Segmentation in Medical Images
Weiyi Xie
Nathalie Willems
Shubham Patil
Yang Li
Mayank Kumar
54
13
0
05 Jul 2024
DeNVeR: Deformable Neural Vessel Representations for Unsupervised Video Vessel Segmentation
DeNVeR: Deformable Neural Vessel Representations for Unsupervised Video Vessel Segmentation
Chun-Hung Wu
Shih-Hong Chen
Chih-Yao Hu
Hsin-Yu Wu
Kai-Hsin Chen
Yu-You Chen
Chih-Hai Su
Chih-Kuo Lee
Yu-Lun Liu
59
2
0
03 Jun 2024
How Much Data are Enough? Investigating Dataset Requirements for
  Patch-Based Brain MRI Segmentation Tasks
How Much Data are Enough? Investigating Dataset Requirements for Patch-Based Brain MRI Segmentation Tasks
Dongang Wang
Peilin Liu
Hengrui Wang
H. Beadnall
K. Kyle
...
Tom Weidong Cai
Wanli Ouyang
Fernando Calamante
Michael Barnett
Chenyu Wang
32
2
0
04 Apr 2024
Deep learning-based auto-segmentation of paraganglioma for growth
  monitoring
Deep learning-based auto-segmentation of paraganglioma for growth monitoring
E. Sijben
Jeroen Jansen
M. de Ridder
Peter A. N. Bosman
Tanja Alderliesten
34
1
0
19 Mar 2024
Overcoming Dimensional Collapse in Self-supervised Contrastive Learning
  for Medical Image Segmentation
Overcoming Dimensional Collapse in Self-supervised Contrastive Learning for Medical Image Segmentation
Jamshid Hassanpour
V. Srivastav
Didier Mutter
N. Padoy
SSL
57
2
0
22 Feb 2024
Masked LoGoNet: Fast and Accurate 3D Image Analysis for Medical Domain
Masked LoGoNet: Fast and Accurate 3D Image Analysis for Medical Domain
Amin Karimi Monsefi
Payam Karisani
Mengxi Zhou
Stacey S. Choi
Nathan Doble
Heng Ji
Srinivasan Parthasarathy
R. Ramnath
43
5
0
09 Feb 2024
CSAM: A 2.5D Cross-Slice Attention Module for Anisotropic Volumetric
  Medical Image Segmentation
CSAM: A 2.5D Cross-Slice Attention Module for Anisotropic Volumetric Medical Image Segmentation
A. Hung
Haoxin Zheng
Kai Zhao
Xiaoxi Du
Kaifeng Pang
Qi Miao
Steven S. Raman
D. Terzopoulos
Kyunghyun Sung
3DPC
33
4
0
08 Nov 2023
A review of uncertainty quantification in medical image analysis:
  probabilistic and non-probabilistic methods
A review of uncertainty quantification in medical image analysis: probabilistic and non-probabilistic methods
Ling Huang
S. Ruan
Yucheng Xing
Mengling Feng
41
20
0
09 Oct 2023
AutoPET Challenge 2023: Sliding Window-based Optimization of U-Net
AutoPET Challenge 2023: Sliding Window-based Optimization of U-Net
Matthias Hadlich
Zdravko Marinov
Rainer Stiefelhagen
20
2
0
21 Sep 2023
MCPA: Multi-scale Cross Perceptron Attention Network for 2D Medical
  Image Segmentation
MCPA: Multi-scale Cross Perceptron Attention Network for 2D Medical Image Segmentation
Liang Xu
Mingxi Chen
Yiyu Cheng
Pengfei Shao
Shuwei Shen
Peng Yao
Ronald X. Xu
ViT
32
0
0
27 Jul 2023
Diabetic Foot Ulcer Grand Challenge 2022 Summary
Diabetic Foot Ulcer Grand Challenge 2022 Summary
Connah Kendrick
B. Cassidy
N. Reeves
Joseph M Pappachan
C. O'Shea
Vishnu Chandrabalan
Moi Hoon Yap
17
4
0
24 Apr 2023
SAM.MD: Zero-shot medical image segmentation capabilities of the Segment
  Anything Model
SAM.MD: Zero-shot medical image segmentation capabilities of the Segment Anything Model
Saikat Roy
Tassilo Wald
Gregor Koehler
Maximilian R. Rokuss
Nico Disch
Julius Holzschuh
David Zimmerer
Klaus H. Maier-Hein
MedIm
VLM
35
95
0
10 Apr 2023
Segmentation of Planning Target Volume in CT Series for Total Marrow
  Irradiation Using U-Net
Segmentation of Planning Target Volume in CT Series for Total Marrow Irradiation Using U-Net
R. C. Brioso
D. Dei
C. Franzese
N. Lambri
Daniele Loiacono
P. Mancosu
M. Scorsetti
21
0
0
05 Apr 2023
Knowledge Distillation for Adaptive MRI Prostate Segmentation Based on
  Limit-Trained Multi-Teacher Models
Knowledge Distillation for Adaptive MRI Prostate Segmentation Based on Limit-Trained Multi-Teacher Models
Eddardaa Ben Loussaief
Hatem A. Rashwan
Mohammed Ayad
Mohammed Zakaria Hassan
D. Puig
29
0
0
16 Mar 2023
CTG-Net: An Efficient Cascaded Framework Driven by Terminal Guidance
  Mechanism for Dilated Pancreatic Duct Segmentation
CTG-Net: An Efficient Cascaded Framework Driven by Terminal Guidance Mechanism for Dilated Pancreatic Duct Segmentation
Liwen Zou
Zhen-zhai Cai
Y. Qiu
Luying Gui
L. Mao
Xiaoping Yang
MedIm
30
6
0
06 Mar 2023
3D PETCT Tumor Lesion Segmentation via GCN Refinement
3D PETCT Tumor Lesion Segmentation via GCN Refinement
Hengzhi Xue
Qingqing Fang
Yudong Yao
Yueyang Teng
3DPC
3DV
10
3
0
24 Feb 2023
Self-supervised Registration and Segmentation of the Ossicles with A
  Single Ground Truth Label
Self-supervised Registration and Segmentation of the Ossicles with A Single Ground Truth Label
Yike Zhang
J. Noble
11
7
0
15 Feb 2023
Graph Convolution Based Cross-Network Multi-Scale Feature Fusion for
  Deep Vessel Segmentation
Graph Convolution Based Cross-Network Multi-Scale Feature Fusion for Deep Vessel Segmentation
Gangming Zhao
Kongming Liang
C. Pan
Fandong Zhang
Xianpeng Wu
Xinyang Hu
Yizhou Yu
MedIm
36
27
0
06 Jan 2023
MSCDA: Multi-level Semantic-guided Contrast Improves Unsupervised Domain
  Adaptation for Breast MRI Segmentation in Small Datasets
MSCDA: Multi-level Semantic-guided Contrast Improves Unsupervised Domain Adaptation for Breast MRI Segmentation in Small Datasets
Sheng Kuang
Henry C. Woodruff
R. Granzier
T. Nijnatten
M. Lobbes
M. Smidt
Philippe Lambin
S. Mehrkanoon
25
16
0
04 Jan 2023
RepMode: Learning to Re-parameterize Diverse Experts for Subcellular
  Structure Prediction
RepMode: Learning to Re-parameterize Diverse Experts for Subcellular Structure Prediction
Donghao Zhou
Chunbin Gu
Junde Xu
Furui Liu
Qiong Wang
Guangyong Chen
Pheng-Ann Heng
MoE
13
4
0
20 Dec 2022
Feedback Chain Network For Hippocampus Segmentation
Feedback Chain Network For Hippocampus Segmentation
Heyu Huang
Runmin Cong
Lianhe Yang
Ling Du
C. Wang
Sam Kwong
33
2
0
15 Nov 2022
A Radiogenomics Pipeline for Lung Nodules Segmentation and Prediction of
  EGFR Mutation Status from CT Scans
A Radiogenomics Pipeline for Lung Nodules Segmentation and Prediction of EGFR Mutation Status from CT Scans
Ivo Gollini Navarrete
Mohammad Yaqub
26
3
0
12 Nov 2022
APAUNet: Axis Projection Attention UNet for Small Target in 3D Medical
  Segmentation
APAUNet: Axis Projection Attention UNet for Small Target in 3D Medical Segmentation
Yuncheng Jiang
Zixun Zhang
Shixi Qin
Yao Guo
Zhuguo Li
Shuguang Cui
40
12
0
04 Oct 2022
A Review of Modern Approaches for Coronary Angiography Imaging Analysis
A Review of Modern Approaches for Coronary Angiography Imaging Analysis
Maxim Y Popov
Temirgali Aimyshev
Eldar Ismailov
Ablay Bulegenov
S. Fazli
26
3
0
28 Sep 2022
Detecting respiratory motion artefacts for cardiovascular MRIs to ensure
  high-quality segmentation
Detecting respiratory motion artefacts for cardiovascular MRIs to ensure high-quality segmentation
Amin Ranem
John Kalkhof
Caner Ozer
Anirban Mukhopadhyay
I. Oksuz
19
3
0
20 Sep 2022
3D Cross-Pseudo Supervision (3D-CPS): A semi-supervised nnU-Net
  architecture for abdominal organ segmentation
3D Cross-Pseudo Supervision (3D-CPS): A semi-supervised nnU-Net architecture for abdominal organ segmentation
Yo-Ping Huang
Han Zhang
Yan Yan
Haseeb Hassan
21
3
0
19 Sep 2022
Rethinking the Unpretentious U-net for Medical Ultrasound Image
  Segmentation
Rethinking the Unpretentious U-net for Medical Ultrasound Image Segmentation
Gongping Chen
L. Li
Jianxun Zhang
Yu Dai
SSeg
21
66
0
15 Sep 2022
Moving from 2D to 3D: volumetric medical image classification for rectal
  cancer staging
Moving from 2D to 3D: volumetric medical image classification for rectal cancer staging
Joohyun Lee
J. Oh
Inkyu Shin
You-sung Kim
D. Sohn
Tae-Sung Kim
In So Kweon
MedIm
24
4
0
13 Sep 2022
Counterfactual Image Synthesis for Discovery of Personalized Predictive
  Image Markers
Counterfactual Image Synthesis for Discovery of Personalized Predictive Image Markers
Amar Kumar
Anjun Hu
Brennan Nichyporuk
J. Falet
Douglas L. Arnold
Sotirios A. Tsaftaris
Tal Arbel
MedIm
27
10
0
03 Aug 2022
Hybrid Skip: A Biologically Inspired Skip Connection for the UNet
  Architecture
Hybrid Skip: A Biologically Inspired Skip Connection for the UNet Architecture
N. Zioulis
G. Albanis
Petros Drakoulis
Federico Álvarez
D. Zarpalas
P. Daras
29
11
0
11 Jul 2022
Evidence fusion with contextual discounting for multi-modality medical
  image segmentation
Evidence fusion with contextual discounting for multi-modality medical image segmentation
Ling Huang
Thierry Denoeux
P. Vera
S. Ruan
MedIm
28
28
0
23 Jun 2022
Calibrated Bagging Deep Learning for Image Semantic Segmentation: A Case
  Study on COVID-19 Chest X-ray Image
Calibrated Bagging Deep Learning for Image Semantic Segmentation: A Case Study on COVID-19 Chest X-ray Image
Lucy Nwosu
Xiangfang Li
Lijun Qian
Seungchan Kim
Xishuang Dong
34
3
0
27 May 2022
UNet#: A UNet-like Redesigning Skip Connections for Medical Image
  Segmentation
UNet#: A UNet-like Redesigning Skip Connections for Medical Image Segmentation
Ledan Qian
Xiao Zhou
Yi Li
Zhongyi Hu
38
5
0
24 May 2022
Detection Masking for Improved OCR on Noisy Documents
Detection Masking for Improved OCR on Noisy Documents
Daniel Rotman
Ophir Azulai
Inbar Shapira
Yevgeny Burshtein
Udi Barzelay
38
4
0
17 May 2022
Application of belief functions to medical image segmentation: A review
Application of belief functions to medical image segmentation: A review
Ling Huang
S. Ruan
Thierry Denoeux
EDL
MedIm
27
30
0
03 May 2022
Preoperative brain tumor imaging: models and software for segmentation
  and standardized reporting
Preoperative brain tumor imaging: models and software for segmentation and standardized reporting
D. Bouget
André Pedersen
A. Jakola
V. Kavouridis
K. Emblem
...
M. Witte
A. Zwinderman
P. D. W. Hamer
O. Solheim
Ingerid Reinertsen
28
21
0
29 Apr 2022
CAT-Net: A Cross-Slice Attention Transformer Model for Prostate Zonal
  Segmentation in MRI
CAT-Net: A Cross-Slice Attention Transformer Model for Prostate Zonal Segmentation in MRI
A. Hung
Haoxin Zheng
Qi Miao
S. Raman
D. Terzopoulos
Kyunghyun Sung
ViT
MedIm
30
44
0
29 Mar 2022
Slice Imputation: Intermediate Slice Interpolation for Anisotropic 3D
  Medical Image Segmentation
Slice Imputation: Intermediate Slice Interpolation for Anisotropic 3D Medical Image Segmentation
Zhaotao Wu
Jia Wei
Jiabing Wang
Rui Li
15
4
0
21 Mar 2022
Towards Bi-directional Skip Connections in Encoder-Decoder Architectures
  and Beyond
Towards Bi-directional Skip Connections in Encoder-Decoder Architectures and Beyond
Tiange Xiang
Chaoyi Zhang
Xinyi Wang
Yang Song
Dongnan Liu
Heng-Chiao Huang
Weidong (Tom) Cai
MedIm
AI4CE
SSeg
16
13
0
11 Mar 2022
Enhancing Organ at Risk Segmentation with Improved Deep Neural Networks
Enhancing Organ at Risk Segmentation with Improved Deep Neural Networks
I. Isler
C. Lisle
J. Rineer
P. Kelly
D. Turgut
Jacob Ricci
Ulas Bagci
SSeg
13
4
0
03 Feb 2022
Lymphoma segmentation from 3D PET-CT images using a deep evidential
  network
Lymphoma segmentation from 3D PET-CT images using a deep evidential network
Ling Huang
S. Ruan
P. Decazes
Thierry Denoeux
3DPC
MedIm
41
37
0
31 Jan 2022
PaRT: Parallel Learning Towards Robust and Transparent AI
PaRT: Parallel Learning Towards Robust and Transparent AI
Mahsa Paknezhad
Hamsawardhini Rengarajan
Chenghao Yuan
Sujanya Suresh
Manas Gupta
Savitha Ramasamy
Hwee Kuan Lee
OOD
38
1
0
24 Jan 2022
Contrastive and Selective Hidden Embeddings for Medical Image
  Segmentation
Contrastive and Selective Hidden Embeddings for Medical Image Segmentation
Zhuowei Li
Zihao Liu
Zhiqiang Hu
Qing Xia
Ruiqin Xiong
Shaoting Zhang
Dimitris N. Metaxas
Tingting Jiang
SSL
35
8
0
21 Jan 2022
AWSnet: An Auto-weighted Supervision Attention Network for Myocardial
  Scar and Edema Segmentation in Multi-sequence Cardiac Magnetic Resonance
  Images
AWSnet: An Auto-weighted Supervision Attention Network for Myocardial Scar and Edema Segmentation in Multi-sequence Cardiac Magnetic Resonance Images
Kaini Wang
Xin Yang
Juzheng Miao
Lei Li
Jing Yao
Ping Zhou
Wufeng Xue
Guangquan Zhou
Xiahai Zhuang
Dong Ni
23
41
0
14 Jan 2022
Causality-inspired Single-source Domain Generalization for Medical Image
  Segmentation
Causality-inspired Single-source Domain Generalization for Medical Image Segmentation
Cheng Ouyang
C. L. P. Chen
Surui Li
Zeju Li
C. Qin
Wenjia Bai
Daniel Rueckert
OOD
30
155
0
24 Nov 2021
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