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Sequence-Only Prediction of Binding Affinity Changes: A Robust and Interpretable Model for Antibody Engineering

Sequence-Only Prediction of Binding Affinity Changes: A Robust and Interpretable Model for Antibody Engineering

14 May 2025
Chen Liu
Mingchen Li
Yang Tan
Wenrui Gou
Guisheng Fan
Bingxin Zhou
ArXiv (abs)PDFHTML

Papers citing "Sequence-Only Prediction of Binding Affinity Changes: A Robust and Interpretable Model for Antibody Engineering"

7 / 7 papers shown
Title
Immunogenicity Prediction with Dual Attention Enables Vaccine Target Selection
Immunogenicity Prediction with Dual Attention Enables Vaccine Target Selection
Song Li
Yang Tan
Song Ke
Liang Hong
Bingxin Zhou
62
4
0
03 Oct 2024
ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding
ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding
Yijia Xiao
Edward Sun
Yiqiao Jin
Qifan Wang
Wei Wang
114
16
0
21 Aug 2024
Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein
  Language Models
Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models
Yang Tan
Mingchen Li
Bingxin Zhou
Bozitao Zhong
Lirong Zheng
P. Tan
Ziyi Zhou
Huiqun Yu
Guisheng Fan
Liang Hong
54
11
0
23 Apr 2024
Ankh: Optimized Protein Language Model Unlocks General-Purpose Modelling
Ankh: Optimized Protein Language Model Unlocks General-Purpose Modelling
Ahmed Elnaggar
Hazem Essam
Wafaa Salah-Eldin
Walid Moustafa
Mohamed Elkerdawy
Charlotte Rochereau
B. Rost
221
102
0
16 Jan 2023
RoFormer: Enhanced Transformer with Rotary Position Embedding
RoFormer: Enhanced Transformer with Rotary Position Embedding
Jianlin Su
Yu Lu
Shengfeng Pan
Ahmed Murtadha
Bo Wen
Yunfeng Liu
327
2,533
0
20 Apr 2021
Pre-training of Graph Neural Network for Modeling Effects of Mutations
  on Protein-Protein Binding Affinity
Pre-training of Graph Neural Network for Modeling Effects of Mutations on Protein-Protein Binding Affinity
Xianggen Liu
Yunan Luo
Sen Song
Jian-wei Peng
70
105
0
28 Aug 2020
End-to-End Learning on 3D Protein Structure for Interface Prediction
End-to-End Learning on 3D Protein Structure for Interface Prediction
Raphael J. L. Townshend
Rishi Bedi
Patricia Suriana
R. Dror
3DV
71
103
0
03 Jul 2018
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