Tokenizing Electron Cloud in Protein-Ligand Interaction Learning

Tokenizing Electron Cloud in Protein-Ligand Interaction Learning

25 May 2025

Papers citing "Tokenizing Electron Cloud in Protein-Ligand Interaction Learning"

12 / 12 papers shown

Title
Learning to Predict Mutation Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning Lirong Wu Yijun Tian Haitao Lin Yufei Huang Siyuan Li Nitesh Chawla Stan Z. Li 53 5 0 16 May 2024
MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding Lirong Wu Yijun Tian Yufei Huang Siyuan Li Haitao Lin Nitesh Chawla Stan Z. Li 39 23 0 22 Feb 2024
Non-equispaced Fourier Neural Solvers for PDEs Haitao Lin Lirong Wu Yongjie Xu Yufei Huang Siyuan Li Guojiang Zhao Z. Stan 32 8 0 09 Dec 2022
DiffBP: Generative Diffusion of 3D Molecules for Target Protein Binding Haitao Lin Yufei Huang Odin Zhang Siqi Ma Meng Liu X. Li Lirong Wu Shuiwang Ji Tingjun Hou Stan Z. Li DiffM 43 63 0 21 Nov 2022
GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation Minkai Xu Lantao Yu Yang Song Chence Shi Stefano Ermon Jian Tang BDL DiffM 109 502 0 06 Mar 2022
Autoregressive Image Generation using Residual Quantization Doyup Lee Chiheon Kim Saehoon Kim Minsu Cho Wook-Shin Han VGen 193 343 0 03 Mar 2022
FourCastNet: A Global Data-driven High-resolution Weather Model using Adaptive Fourier Neural Operators Jaideep Pathak Shashank Subramanian P. Harrington S. Raja Ashesh Chattopadhyay ... Zong-Yi Li Kamyar Azizzadenesheli Pedram Hassanzadeh K. Kashinath Anima Anandkumar AI4Cl 83 674 0 22 Feb 2022
TorchMD-NET: Equivariant Transformers for Neural Network based Molecular Potentials Philipp Thölke Gianni De Fabritiis AI4CE 45 191 0 05 Feb 2022
Self-supervised Learning with Random-projection Quantizer for Speech Recognition Chung-Cheng Chiu James Qin Yu Zhang Jiahui Yu Yonghui Wu SSL 47 167 0 03 Feb 2022
ATOM3D: Tasks On Molecules in Three Dimensions Raphael J. L. Townshend M. Vögele Patricia Suriana Alexander Derry Alexander Powers ... Brandon M. Anderson Stephan Eismann Risi Kondor Russ Altman R. Dror AI4CE 29 121 0 07 Dec 2020
An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale Alexey Dosovitskiy Lucas Beyer Alexander Kolesnikov Dirk Weissenborn Xiaohua Zhai ... Matthias Minderer G. Heigold Sylvain Gelly Jakob Uszkoreit N. Houlsby ViT 76 40,217 0 22 Oct 2020
Junction Tree Variational Autoencoder for Molecular Graph Generation Wengong Jin Regina Barzilay Tommi Jaakkola 279 1,358 0 12 Feb 2018