Revisiting Convolution Architecture in the Realm of DNA Foundation Models

25 February 2025

Papers citing "Revisiting Convolution Architecture in the Realm of DNA Foundation Models"

6 / 6 papers shown

Title
Life-Code: Central Dogma Modeling with Multi-Omics Sequence Unification Zicheng Liu Siyuan Li Zhiyuan Chen Lei Xin Fang Wu Chang Yu Qirong Yang Yucheng Guo Yifan Yang Stan Z. Li SyDa AI4CE 151 0 0 11 Feb 2025
Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling Yair Schiff Chia-Hsiang Kao Aaron Gokaslan Tri Dao Albert Gu Volodymyr Kuleshov Mamba 36 85 0 05 Mar 2024
BEND: Benchmarking DNA Language Models on biologically meaningful tasks Frederikke Isa Marin Felix Teufel Marc Horlacher Dennis Madsen Dennis Pultz Ole Winther Wouter Boomsma 44 35 0 21 Nov 2023
Big Bird: Transformers for Longer Sequences Manzil Zaheer Guru Guruganesh Kumar Avinava Dubey Joshua Ainslie Chris Alberti ... Philip Pham Anirudh Ravula Qifan Wang Li Yang Amr Ahmed VLM 478 2,051 0 28 Jul 2020
Multi-Scale Context Aggregation by Dilated Convolutions Feng Yu V. Koltun SSeg 188 8,421 0 23 Nov 2015
U-Net: Convolutional Networks for Biomedical Image Segmentation Olaf Ronneberger Philipp Fischer Thomas Brox SSeg 3DV 1.1K 76,547 0 18 May 2015