Bridge-IF: Learning Inverse Protein Folding with Markov Bridges

Bridge-IF: Learning Inverse Protein Folding with Markov Bridges

4 November 2024

Papers citing "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"

16 / 16 papers shown

Title
Diffusion Schrödinger Bridge Matching Yuyang Shi Valentin De Bortoli Andrew Campbell Arnaud Doucet DiffM OT 96 85 0 29 Mar 2023
A Reparameterized Discrete Diffusion Model for Text Generation Lin Zheng Jianbo Yuan Lei Yu Lingpeng Kong DiffM 91 68 0 11 Feb 2023
Structure-informed Language Models Are Protein Designers Zaixiang Zheng Yifan Deng Dongyu Xue Yi Zhou YE Fei Quanquan Gu 81 95 0 03 Feb 2023
Scalable Diffusion Models with Transformers William S. Peebles Saining Xie GNN 90 2,299 0 19 Dec 2022
Video Diffusion Models Jonathan Ho Tim Salimans Alexey A. Gritsenko William Chan Mohammad Norouzi David J. Fleet DiffM VGen 204 1,610 0 07 Apr 2022
AlphaDesign: A graph protein design method and benchmark on AlphaFoldDB Zhangyang Gao Cheng Tan Stan Z. Li 171 54 0 01 Feb 2022
Structured Denoising Diffusion Models in Discrete State-Spaces Jacob Austin Daniel D. Johnson Jonathan Ho Daniel Tarlow Rianne van den Berg DiffM 157 936 0 07 Jul 2021
Deep Generative Learning via Schrödinger Bridge Gefei Wang Yuling Jiao Qiang Xu Yang Wang Can Yang DiffM OT 61 102 0 19 Jun 2021
Diffusion Schrödinger Bridge with Applications to Score-Based Generative Modeling Valentin De Bortoli James Thornton J. Heng Arnaud Doucet DiffM OT 104 465 0 01 Jun 2021
Diffusion Models Beat GANs on Image Synthesis Prafulla Dhariwal Alex Nichol 222 7,831 0 11 May 2021
Improved Denoising Diffusion Probabilistic Models Alex Nichol Prafulla Dhariwal DiffM 329 3,675 0 18 Feb 2021
Score-Based Generative Modeling through Stochastic Differential Equations Yang Song Jascha Narain Sohl-Dickstein Diederik P. Kingma Abhishek Kumar Stefano Ermon Ben Poole DiffM SyDa 330 6,453 0 26 Nov 2020
DiffWave: A Versatile Diffusion Model for Audio Synthesis Zhifeng Kong Ming-Yu Liu Jiaji Huang Kexin Zhao Bryan Catanzaro DiffM BDL 149 1,456 0 21 Sep 2020
Learning from Protein Structure with Geometric Vector Perceptrons Bowen Jing Stephan Eismann Patricia Suriana Raphael J. L. Townshend R. Dror GNN 3DV 67 484 0 03 Sep 2020
Denoising Diffusion Probabilistic Models Jonathan Ho Ajay Jain Pieter Abbeel DiffM 622 18,036 0 19 Jun 2020
Deep Unsupervised Learning using Nonequilibrium Thermodynamics Jascha Narain Sohl-Dickstein Eric A. Weiss Niru Maheswaranathan Surya Ganguli SyDa DiffM 298 6,931 0 12 Mar 2015

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