The Role of Graph Topology in the Performance of Biomedical Knowledge
Graph Completion Models

The Role of Graph Topology in the Performance of Biomedical Knowledge Graph Completion Models

6 September 2024

Thomas Martynec

Papers citing "The Role of Graph Topology in the Performance of Biomedical Knowledge Graph Completion Models"

8 / 8 papers shown

Title
BESS: Balanced Entity Sampling and Sharing for Large-Scale Knowledge Graph Completion A. Cattaneo Daniel Justus Harry Mellor Douglas Orr Jérôme Maloberti Ziqiang Liu Thorin Farnsworth Andrew Fitzgibbon Bla.zej Banaszewski Carlo Luschi 41 4 0 22 Nov 2022
TripleRE: Knowledge Graph Embeddings via Tripled Relation Vectors Long Yu Zhi-Ping Luo Huanyong Liu Deng Lin Hongzhu Li Yafeng Deng 44 17 0 17 Sep 2022
Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs Stephen Bonner Ufuk Kirik Ola Engkvist Jian Tang Ian P Barrett 52 21 0 13 Dec 2021
A Review of Biomedical Datasets Relating to Drug Discovery: A Knowledge Graph Perspective Stephen Bonner Ian P Barrett Cheng Ye Rowan Swiers Ola Engkvist A. Bender Charles Tapley Hoyt William L. Hamilton 54 95 0 19 Feb 2021
Bringing Light Into the Dark: A Large-scale Evaluation of Knowledge Graph Embedding Models Under a Unified Framework Mehdi Ali M. Berrendorf Charles Tapley Hoyt Laurent Vermue Mikhail Galkin Sahand Sharifzadeh Asja Fischer Volker Tresp Jens Lehmann 46 124 0 23 Jun 2020
Open Graph Benchmark: Datasets for Machine Learning on Graphs Weihua Hu Matthias Fey Marinka Zitnik Yuxiao Dong Hongyu Ren Bowen Liu Michele Catasta J. Leskovec 303 2,730 0 02 May 2020
OpenBioLink: A benchmarking framework for large-scale biomedical link prediction Anna Breit Simon Ott Asan Agibetov Matthias Samwald LM&MA 76 55 0 10 Dec 2019
Embedding Entities and Relations for Learning and Inference in Knowledge Bases Bishan Yang Wen-tau Yih Xiaodong He Jianfeng Gao Li Deng NAI 93 3,194 0 20 Dec 2014