GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic
Foundation Models

GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models

1 June 2024

Zicheng Liu

Siyuan Li

Cheng Tan

Stan Z. Li

Papers citing "GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models"

7 / 7 papers shown

Title
Gene42: Long-Range Genomic Foundation Model With Dense Attention Kirill Vishniakov Boulbaba Ben Amor Engin Tekin Nancy A. ElNaker Karthik Viswanathan ... Tiago Magalhaes Natalia Vassilieva Dwarikanath Mahapatra Marco Pimentel and Shadab Khan 3DV 44 0 0 20 Mar 2025
Life-Code: Central Dogma Modeling with Multi-Omics Sequence Unification Zicheng Liu Siyuan Li Zhiyuan Chen Lei Xin Fang Wu Chang Yu Qirong Yang Yucheng Guo Yifan Yang Stan Z. Li SyDa AI4CE 92 0 0 11 Feb 2025
Does your model understand genes? A benchmark of gene properties for biological and text models Yoav Kan-Tor Michael M. Danziger Eden Zohar Matan Ninio Yishai Shimoni 75 1 0 05 Dec 2024
DMT-HI: MOE-based Hyperbolic Interpretable Deep Manifold Transformation for Unspervised Dimensionality Reduction Z. Zang Yuhao Wang J. Wu Hong Liu Yue Shen Stan Z. Li Zhen Lei 188 0 0 25 Oct 2024
OmniGenBench: Automating Large-scale in-silico Benchmarking for Genomic Foundation Models Heng Yang Jack Cole Ke Li 28 0 0 02 Oct 2024
dnaGrinder: a lightweight and high-capacity genomic foundation model Qihang Zhao Chi Zhang Weixiong Zhang 31 0 0 24 Sep 2024
Train Short, Test Long: Attention with Linear Biases Enables Input Length Extrapolation Ofir Press Noah A. Smith M. Lewis 253 701 0 27 Aug 2021