Dirichlet Flow Matching with Applications to DNA Sequence Design

Dirichlet Flow Matching with Applications to DNA Sequence Design

8 February 2024

Regina Barzilay

Papers citing "Dirichlet Flow Matching with Applications to DNA Sequence Design"

16 / 16 papers shown

Title
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Tong Chen Yinuo Zhang Sophia Tang Pranam Chatterjee 33 0 0 11 May 2025
DDPS: Discrete Diffusion Posterior Sampling for Paths in Layered Graphs Hao Luan See-Kiong Ng Chun Kai Ling 52 0 0 29 Apr 2025
HELM: Hierarchical Encoding for mRNA Language Modeling Mehdi Yazdani-Jahromi Mangal Prakash Tommaso Mansi Artem Moskalev Rui Liao 91 2 0 13 Mar 2025
Fine-Tuning Discrete Diffusion Models with Policy Gradient Methods Oussama Zekri Nicolas Boullé DiffM 65 3 0 03 Feb 2025
Bayesian Flow Is All You Need to Sample Out-of-Distribution Chemical Spaces Nianze Tao OOD OODD BDL 108 0 0 16 Dec 2024
Wasserstein Flow Matching: Generative modeling over families of distributions Doron Haviv Aram-Alexandre Pooladian D. Pe’er Brandon Amos OOD 37 0 0 01 Nov 2024
Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design Chenyu Wang Masatoshi Uehara Yichun He Amy Wang Tommaso Biancalani Avantika Lal Tommi Jaakkola Sergey Levine Hanchen Wang Aviv Regev 53 8 0 17 Oct 2024
How Discrete and Continuous Diffusion Meet: Comprehensive Analysis of Discrete Diffusion Models via a Stochastic Integral Framework Yinuo Ren Haoxuan Chen Grant M. Rotskoff Lexing Ying 47 3 0 04 Oct 2024
PnP-Flow: Plug-and-Play Image Restoration with Flow Matching Ségolène Martin Anne Gagneux Paul Hagemann Gabriele Steidl 42 9 0 03 Oct 2024
Generative Assignment Flows for Representing and Learning Joint Distributions of Discrete Data Bastian Boll Daniel Gonzalez-Alvarado Stefania Petra Christoph Schnörr 44 4 0 06 Jun 2024
Unlocking Guidance for Discrete State-Space Diffusion and Flow Models Hunter Nisonoff Junhao Xiong Stephan Allenspach Jennifer Listgarten 60 31 0 03 Jun 2024
Categorical Flow Matching on Statistical Manifolds Chaoran Cheng Jiahan Li Jian-wei Peng Ge Liu 61 10 0 26 May 2024
One-step Diffusion with Distribution Matching Distillation Tianwei Yin Michael Gharbi Richard Zhang Eli Shechtman Frédo Durand William T. Freeman Taesung Park DiffM 124 219 0 30 Nov 2023
Latent Diffusion Model for DNA Sequence Generation Zehui Li Yuhao Ni Tim August B. Huygelen Akashaditya Das Guoxuan Xia Guy-Bart Stan Yiren Zhao 44 9 0 09 Oct 2023
Multisample Flow Matching: Straightening Flows with Minibatch Couplings Aram-Alexandre Pooladian Heli Ben-Hamu Carles Domingo-Enrich Brandon Amos Y. Lipman Ricky T. Q. Chen 60 126 0 28 Apr 2023
A Continuous Time Framework for Discrete Denoising Models Andrew Campbell Joe Benton Valentin De Bortoli Tom Rainforth George Deligiannidis Arnaud Doucet DiffM 188 134 0 30 May 2022