Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design

7 February 2024

Papers citing "Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design"

24 / 24 papers shown

Title
Piloting Structure-Based Drug Design via Modality-Specific Optimal Schedule Keyue Qiu Yuxuan Song Zhehuan Fan Peidong Liu Z. Zhang Mingyue Zheng Hao Zhou Wei-Ying Ma 26 0 0 12 May 2025
Insertion Language Models: Sequence Generation with Arbitrary-Position Insertions Dhruvesh Patel Aishwarya Sahoo Avinash Amballa Tahira Naseem Tim G. J. Rudner Andrew McCallum KELM 47 0 0 09 May 2025
Guide your favorite protein sequence generative model Junhao Xiong Hunter Nisonoff Ishan Gaur Jennifer Listgarten DiffM 56 0 0 07 May 2025
DDPS: Discrete Diffusion Posterior Sampling for Paths in Layered Graphs Hao Luan See-Kiong Ng Chun Kai Ling 52 0 0 29 Apr 2025
FLOWR: Flow Matching for Structure-Aware De Novo, Interaction- and Fragment-Based Ligand Generation Julian Cremer Ross Irwin Alessandro Tibot J. Janet Simon Olsson Djork-Arné Clevert 35 0 0 14 Apr 2025
Preference-Based Alignment of Discrete Diffusion Models Umberto Borso Davide Paglieri Jude Wells Tim Rocktaschel 57 1 0 11 Mar 2025
All-atom Diffusion Transformers: Unified generative modelling of molecules and materials Chaitanya K. Joshi Xiang Fu Yi-Lun Liao Vahe Gharakhanyan Benjamin Kurt Miller Anuroop Sriram Zachary W. Ulissi DiffM 53 4 0 05 Mar 2025
RiboGen: RNA Sequence and Structure Co-Generation with Equivariant MultiFlow Dana Rubin Allan dos Santos Costa Manvitha Ponnapati J. Jacobson 36 0 0 03 Mar 2025
Theoretical Benefit and Limitation of Diffusion Language Model Guhao Feng Yihan Geng Jian-Yu Guan Wei Yu Wu Liwei Wang Di He DiffM 55 0 0 13 Feb 2025
Open Materials Generation with Stochastic Interpolants Philipp Hoellmer Thomas Egg Maya M. Martirossyan Eric Fuemmeler Amit Gupta ... George Karypis Mark K. Transtrum Richard G. Hennig E. Tadmor Stefano Martiniani AI4CE 90 0 0 04 Feb 2025
Video Latent Flow Matching: Optimal Polynomial Projections for Video Interpolation and Extrapolation Yang Cao Zhao-quan Song Chiwun Yang VGen 46 2 0 01 Feb 2025
Simplified and Generalized Masked Diffusion for Discrete Data Jiaxin Shi Kehang Han Z. Wang Arnaud Doucet Michalis K. Titsias DiffM 76 62 0 17 Jan 2025
Predicting sub-population specific viral evolution Wenxian Shi Menghua Wu Regina Barzilay 29 0 0 28 Oct 2024
Energy-Based Diffusion Language Models for Text Generation Minkai Xu Tomas Geffner Karsten Kreis Weili Nie Yilun Xu J. Leskovec Stefano Ermon Arash Vahdat DiffM 46 7 0 28 Oct 2024
Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design Chenyu Wang Masatoshi Uehara Yichun He Amy Wang Tommaso Biancalani Avantika Lal Tommi Jaakkola Sergey Levine Hanchen Wang Aviv Regev 50 8 0 17 Oct 2024
UniGEM: A Unified Approach to Generation and Property Prediction for Molecules Shikun Feng Yuyan Ni Yan Lu Zhi-Ming Ma Wei-Ying Ma Yanyan Lan 38 5 0 14 Oct 2024
Think While You Generate: Discrete Diffusion with Planned Denoising Sulin Liu Juno Nam Andrew Campbell Hannes Stärk Yilun Xu Tommi Jaakkola Rafael Gómez-Bombarelli DiffM 38 6 0 08 Oct 2024
How Discrete and Continuous Diffusion Meet: Comprehensive Analysis of Discrete Diffusion Models via a Stochastic Integral Framework Yinuo Ren Haoxuan Chen Grant M. Rotskoff Lexing Ying 47 3 0 04 Oct 2024
Convergence of Score-Based Discrete Diffusion Models: A Discrete-Time Analysis Zikun Zhang Zixiang Chen Quanquan Gu DiffM 58 3 0 03 Oct 2024
Meta Flow Matching: Integrating Vector Fields on the Wasserstein Manifold Lazar Atanackovic Xi Zhang Brandon Amos Mathieu Blanchette Leo J. Lee Yoshua Bengio Alexander Tong Kirill Neklyudov 33 5 0 26 Aug 2024
Unlocking Guidance for Discrete State-Space Diffusion and Flow Models Hunter Nisonoff Junhao Xiong Stephan Allenspach Jennifer Listgarten 55 31 0 03 Jun 2024
Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Backbone Generation Guillaume Huguet James Vuckovic Kilian Fatras Eric Thibodeau-Laufer Pablo Lemos ... Jarrid Rector-Brooks Tara Akhound-Sadegh Michael M. Bronstein Alexander Tong A. Bose 32 26 0 30 May 2024
Glauber Generative Model: Discrete Diffusion Models via Binary Classification Harshit Varma Dheeraj M. Nagaraj Karthikeyan Shanmugam VLM 64 2 0 27 May 2024
Categorical Flow Matching on Statistical Manifolds Chaoran Cheng Jiahan Li Jian-wei Peng Ge Liu 58 10 0 26 May 2024