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Semi-supervised Segmentation of Histopathology Images with Noise-Aware Topological Consistency

28 November 2023

Meilong Xu

Xiaoling Hu

Saumya Gupta

Shahira Abousamra

Chao Chen

ArXiv (abs)PDF HTML Github (11★)

Papers citing "Semi-supervised Segmentation of Histopathology Images with Noise-Aware Topological Consistency"

27 / 27 papers shown

Title
RankByGene: Gene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency Wentao Huang Meilong Xu Xiaoling Hu Shahira Abousamra Aniruddha Ganguly ... Prateek Prasanna Tahsin M. Kurc Joel H. Saltz Michael L. Miller Chong Chen 120 0 0 22 Nov 2024
TopoDiffusionNet: A Topology-aware Diffusion Model Saumya Gupta Dimitris Samaras Chong Chen DiffM 139 4 0 22 Oct 2024
Calibrating Uncertainty for Semi-Supervised Crowd Counting Chen Li Xiaoling Hu Shahira Abousamra Chao Chen 82 21 0 19 Aug 2023
Rethinking Semi-Supervised Medical Image Segmentation: A Variance-Reduction Perspective Chenyu You Weicheng Dai Yifei Min Fenglin Liu David Clifton S. Kevin Zhou Lawrence H. Staib James S Duncan 67 70 0 03 Feb 2023
Semi-Supervised Semantic Segmentation via Gentle Teaching Assistant Ying Jin Jiaqi Wang Dahua Lin 61 44 0 18 Jan 2023
Learning with Limited Annotations: A Survey on Deep Semi-Supervised Learning for Medical Image Segmentation Rushi Jiao Yichi Zhang Leiting Ding Rong Cai Jicong Zhang 111 162 0 28 Jul 2022
Learning Probabilistic Topological Representations Using Discrete Morse Theory Xiaoling Hu Dimitris Samaras Chao Chen 46 21 0 03 Jun 2022
BoostMIS: Boosting Medical Image Semi-supervised Learning with Adaptive Pseudo Labeling and Informative Active Annotation Wenqiao Zhang Lei Zhu James Hallinan A. Makmur Shengyu Zhang Qingpeng Cai Beng Chin Ooi 112 86 0 04 Mar 2022
Enhancing Pseudo Label Quality for Semi-Supervised Domain-Generalized Medical Image Segmentation Huifeng Yao Xiaowei Hu Xuelong Li 68 94 0 21 Jan 2022
Inconsistency-aware Uncertainty Estimation for Semi-supervised Medical Image Segmentation Yinghuan Shi Jian Zhang T. Ling Jiwen Lu Yefeng Zheng Qian Yu Lei Qi Yang Gao UQCV 72 150 0 17 Oct 2021
Pseudo-label refinement using superpixels for semi-supervised brain tumour segmentation Bethany H. Thompson G. D. Caterina J. Voisey 68 33 0 16 Oct 2021
Mutual Consistency Learning for Semi-supervised Medical Image Segmentation Yicheng Wu Z. Ge Donghao Zhang Minfeng Xu Lei Zhang Yong-quan Xia Jianfei Cai OOD SSL 142 242 0 21 Sep 2021
SimCVD: Simple Contrastive Voxel-Wise Representation Distillation for Semi-Supervised Medical Image Segmentation Chenyu You Yuan Zhou Ruihan Zhao Lawrence H. Staib James S. Duncan 113 228 0 13 Aug 2021
Swin-Unet: Unet-like Pure Transformer for Medical Image Segmentation Hu Cao Yueyue Wang Jieneng Chen Dongsheng Jiang Xiaopeng Zhang Qi Tian Manning Wang ViT MedIm 141 2,922 0 12 May 2021
Dual-Consistency Semi-Supervised Learning with Uncertainty Quantification for COVID-19 Lesion Segmentation from CT Images Yanwen Li Luyang Luo Huangjing Lin Hao Chen Pheng-Ann Heng 69 53 0 07 Apr 2021
Semi-Supervised Semantic Segmentation with Cross-Consistency Training Yassine Ouali C´eline Hudelot Myriam Tami 131 729 0 19 Mar 2020
FixMatch: Simplifying Semi-Supervised Learning with Consistency and Confidence Kihyuk Sohn David Berthelot Chun-Liang Li Zizhao Zhang Nicholas Carlini E. D. Cubuk Alexey Kurakin Han Zhang Colin Raffel AAML 163 3,578 0 21 Jan 2020
A Topological Loss Function for Deep-Learning based Image Segmentation using Persistent Homology J. Clough Nicholas Byrne Ilkay Oksuz Zhenzhong Lan Julia A. Schnabel A. King 65 221 0 04 Oct 2019
Uncertainty-aware Self-ensembling Model for Semi-supervised 3D Left Atrium Segmentation Lequan Yu Shujun Wang Xuelong Li Chi-Wing Fu Pheng-Ann Heng UQCV 95 856 0 16 Jul 2019
Topology-Preserving Deep Image Segmentation Xiaoling Hu Fuxin Li Dimitris Samaras Chao Chen 54 279 0 12 Jun 2019
Transformation Consistent Self-ensembling Model for Semi-supervised Medical Image Segmentation Xuelong Li Lequan Yu Hao Chen Chi-Wing Fu Lei Xing Pheng-Ann Heng MedIm 81 387 0 28 Feb 2019
ADVENT: Adversarial Entropy Minimization for Domain Adaptation in Semantic Segmentation Tuan-Hung Vu Himalaya Jain Max Bucher Matthieu Cord P. Pérez 135 1,301 0 30 Nov 2018
UNet++: A Nested U-Net Architecture for Medical Image Segmentation Zongwei Zhou M. R. Siddiquee Nima Tajbakhsh Jianming Liang SSeg 105 6,166 0 18 Jul 2018
MILD-Net: Minimal Information Loss Dilated Network for Gland Instance Segmentation in Colon Histology Images S. Graham Hao Chen Jevgenij Gamper Qi Dou Pheng-Ann Heng David R. J. Snead Yee Wah Tsang Nasir M. Rajpoot MedIm 88 308 0 05 Jun 2018
Encoder-Decoder with Atrous Separable Convolution for Semantic Image Segmentation Liang-Chieh Chen Yukun Zhu George Papandreou Florian Schroff Hartwig Adam SSeg 490 13,194 0 07 Feb 2018
Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations Carole H Sudre Wenqi Li Tom Vercauteren Sébastien Ourselin M. Jorge Cardoso SSeg 143 2,153 0 11 Jul 2017
Pyramid Scene Parsing Network Hengshuang Zhao Jianping Shi Xiaojuan Qi Xiaogang Wang Jiaya Jia VOS SSeg 665 12,035 0 04 Dec 2016