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MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter

19 October 2023

Zhiyuan Liu

Hao Fei

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Papers citing "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter"

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Title
NOCL: Node-Oriented Conceptualization LLM for Graph Tasks without Message Passing Wei Li Mengcheng Lan Jiaxing Xu Yiping Ke 17 0 0 28 May 2025
Rethinking Text-based Protein Understanding: Retrieval or LLM? Juntong Wu Zijing Liu He Cao Hao Li Bin Feng Zishan Shu Ke Yu Li Yuan Yu-Feng Li 83 1 0 26 May 2025
Improving Chemical Understanding of LLMs via SMILES Parsing Yunhui Jang Jaehyung Kim SungSoo Ahn 38 0 0 22 May 2025
Platonic Grounding for Efficient Multimodal Language Models Moulik Choraria Xinbo Wu Akhil Bhimaraju Nitesh Sekhar Yue Wu Xu Zhang Prateek Singhal Lav Varshney 112 0 0 27 Apr 2025
How to Detect and Defeat Molecular Mirage: A Metric-Driven Benchmark for Hallucination in LLM-based Molecular Comprehension Hao Li Liuzhenghao Lv He Cao Zijing Liu Zhiyuan Yan Yu Wang Yonghong Tian Yuezun Li Li Yuan 136 2 0 10 Apr 2025
BRIDGES: Bridging Graph Modality and Large Language Models within EDA Tasks Wei Li Yang Zou Christopher Ellis Ruben Purdy Shawn Blanton José M. F. Moura 48 0 0 07 Apr 2025
GraphT5: Unified Molecular Graph-Language Modeling via Multi-Modal Cross-Token Attention Sangyeup Kim Nayeon Kim Yinhua Piao Sun Kim 106 0 0 07 Mar 2025
Bridging Molecular Graphs and Large Language Models Runze Wang Mingqi Yang Yanming Shen 182 0 0 05 Mar 2025
MV-CLAM: Multi-View Molecular Interpretation with Cross-Modal Projection via Language Model Sumin Ha Jun Hyeong Kim Yinhua Piao Sun Kim 143 1 0 23 Feb 2025
A Survey of Graph Transformers: Architectures, Theories and Applications Chaohao Yuan Kangfei Zhao Ercan Engin Kuruoglu Liang Wang Tingyang Xu Wenbing Huang Deli Zhao Hong Cheng Yu Rong 205 4 0 23 Feb 2025
NExT-Mol: 3D Diffusion Meets 1D Language Modeling for 3D Molecule Generation Zhiyuan Liu Yanchen Luo Han Huang Enzhi Zhang Changhao Nai Sihang Li Yaorui Shi Xiang Wang Kenji Kawaguchi Tat-Seng Chua 190 4 0 18 Feb 2025
The Graph's Apprentice: Teaching an LLM Low Level Knowledge for Circuit Quality Estimation Reza Moravej Saurabh Bodhe Zhanguang Zhang Didier Chetelat Dimitrios Tsaras Yingxue Zhang Hui-Ling Zhen Jianye Hao Mingxuan Yuan 121 2 0 17 Feb 2025
ChemDFM-X: Towards Large Multimodal Model for Chemistry Zihan Zhao B. Chen Jingpiao Li Lu Chen Liyang Wen ... Ziping Wan Yansi Li Zhongyang Dai Xin Chen Kai Yu AI4CE 245 5 0 03 Jan 2025
From Generalist to Specialist: A Survey of Large Language Models for Chemistry Yang Han Ziping Wan Lu Chen Kai Yu Xin Chen LM&MA 95 3 0 31 Dec 2024
MolParser: End-to-end Visual Recognition of Molecule Structures in the Wild Xi Fang Jiankun Wang X. Cai Shangqian Chen Shuwen Yang Lin Yao Linfeng Zhang Guolin Ke Linfeng Zhang Guolin Ke 142 2 0 17 Nov 2024
GeomCLIP: Contrastive Geometry-Text Pre-training for Molecules Teng Xiao Chao Cui Huaisheng Zhu V. Honavar AI4CE CLIP 146 0 0 16 Nov 2024
Exploring Optimal Transport-Based Multi-Grained Alignments for Text-Molecule Retrieval Zijun Min Bingshuai Liu Li Zhang Jia Song Jinsong Su Song He Xiaochen Bo OT 121 1 0 04 Nov 2024
LLaMo: Large Language Model-based Molecular Graph Assistant Jinyoung Park Minseong Bae Dohwan Ko Hyunwoo J. Kim 100 3 0 31 Oct 2024
GraphTeam: Facilitating Large Language Model-based Graph Analysis via Multi-Agent Collaboration Xin Sky Li Qizhi Chu Yuxiao Chen Yang Liu Yaoqi Liu Zekai Yu Weize Chen Chen Qian C. Shi Cheng Yang LLMAG 140 2 0 23 Oct 2024
Multimodal Large Language Models for Inverse Molecular Design with Retrosynthetic Planning Gang Liu Michael Sun Wojciech Matusik Meng Jiang Jie Chen 126 9 0 05 Oct 2024
Text-guided Diffusion Model for 3D Molecule Generation Yanchen Luo Sihang Li Changhao Nai Zhiyuan Liu Jiancan Wu An Zhang Wenjie Du Xiang Wang 79 7 0 04 Oct 2024
An Investigation of Warning Erroneous Chat Translations in Cross-lingual Communication Yunmeng Li Jun Suzuki Makoto Morishita Kaori Abe Kentaro Inui 123 1 0 28 Aug 2024
Instruction-Based Molecular Graph Generation with Unified Text-Graph Diffusion Model Yuran Xiang Haiteng Zhao Chang Ma Zhi-Hong Deng 76 1 0 19 Aug 2024
UniMoT: Unified Molecule-Text Language Model with Discrete Token Representation Jiayuan Zhu Yunli Qi Yongqiang Chen Nan Yin Zhen Wang Quanming Yao 119 11 0 01 Aug 2024
MolTRES: Improving Chemical Language Representation Learning for Molecular Property Prediction Jun-Hyung Park Yeachan Kim Mingyu Lee Hyuntae Park SangKeun Lee 73 0 0 09 Jul 2024
A Survey on LoRA of Large Language Models Yuren Mao Yuhang Ge Yijiang Fan Wenyi Xu Yu Mi Zhonghao Hu Yunjun Gao ALM 129 41 0 08 Jul 2024
HIGHT: Hierarchical Graph Tokenization for Molecule-Language Alignment Yongqiang Chen Quanming Yao Juzheng Zhang James Cheng Yatao Bian 123 4 0 20 Jun 2024
PRESTO: Progressive Pretraining Enhances Synthetic Chemistry Outcomes He Cao Yanjun Shao Zhiyuan Liu Zijing Liu Xiangru Tang Yuan Yao Yu-Feng Li AI4CE 69 8 0 19 Jun 2024
MolecularGPT: Open Large Language Model (LLM) for Few-Shot Molecular Property Prediction Yuyan Liu Sirui Ding Sheng Zhou Wenqi Fan Qiaoyu Tan 82 11 0 18 Jun 2024
A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discovery Yu Zhang Xiusi Chen Bowen Jin Sheng Wang Shuiwang Ji Wei Wang Jiawei Han 140 42 0 16 Jun 2024
$Diffusion Models in $\textit{De Novo}$ Drug Design$ Diffusion Models in $\textit{De Novo}$ Drug Design Amira Alakhdar Barnabas Poczos Newell Washburn MedIm 94 27 0 07 Jun 2024
ReactXT: Understanding Molecular "Reaction-ship" via Reaction-Contextualized Molecule-Text Pretraining Zhiyuan Liu Yaorui Shi An Zhang Changhao Nai Enzhi Zhang Xiang Wang Kenji Kawaguchi Tat-Seng Chua 84 10 0 23 May 2024
GLaD: Synergizing Molecular Graphs and Language Descriptors for Enhanced Power Conversion Efficiency Prediction in Organic Photovoltaic Devices Thao Nguyen Tiara Torres-Flores Changhyun Hwang Carl Edwards Ying Diao Heng Ji 61 0 0 23 May 2024
ProtT3: Protein-to-Text Generation for Text-based Protein Understanding Zhiyuan Liu An Zhang Hao Fei Enzhi Zhang Xiang Wang Kenji Kawaguchi Tat-Seng Chua 111 19 0 21 May 2024
A Survey of Large Language Models for Graphs Xubin Ren Jiabin Tang Dawei Yin Nitesh Chawla Chao Huang 99 47 0 10 May 2024
Atomas: Hierarchical Alignment on Molecule-Text for Unified Molecule Understanding and Generation Yikun Zhang Geyan Ye Chaohao Yuan Bo Han Long-Kai Huang Jianhua Yao Wei Liu Yu Rong 151 3 0 23 Apr 2024
Heterogeneous Contrastive Learning for Foundation Models and Beyond Lecheng Zheng Baoyu Jing Zihao Li Hanghang Tong Jingrui He VLM 96 22 0 30 Mar 2024
MoleculeQA: A Dataset to Evaluate Factual Accuracy in Molecular Comprehension Xingyu Lu He Cao Zijing Liu Shengyuan Bai Leqing Chen Yuan Yao Hai-Tao Zheng Yu-Feng Li HILM 71 10 0 13 Mar 2024
MolBind: Multimodal Alignment of Language, Molecules, and Proteins Teng Xiao Chao Cui Huaisheng Zhu V. Honavar AI4CE 71 8 0 13 Mar 2024
3M-Diffusion: Latent Multi-Modal Diffusion for Text-Guided Generation of Molecular Graphs Huaisheng Zhu Teng Xiao V. Honavar DiffM 75 5 0 11 Mar 2024
Bridging Text and Molecule: A Survey on Multimodal Frameworks for Molecule Yi Xiao Xiangxin Zhou Qiang Liu Liang Wang AI4CE 59 3 0 07 Mar 2024
Large Language Models are In-Context Molecule Learners Jiatong Li Wei Liu Zhihao Ding Wenqi Fan Yuqiang Li Qing Li 120 6 0 07 Mar 2024
Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey Qizhi Pei Lijun Wu Kaiyuan Gao Jinhua Zhu Yue Wang Zun Wang Tao Qin Rui Yan AI4CE 127 18 0 03 Mar 2024
ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training Le Zhuo Zewen Chi Minghao Xu Heyan Huang Heqi Zheng Conghui He Xian-Ling Mao Wentao Zhang 184 13 0 28 Feb 2024
BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning Qizhi Pei Lijun Wu Kaiyuan Gao Xiaozhuan Liang Yin Fang Jinhua Zhu Shufang Xie Tao Qin Rui Yan AI4CE 119 40 0 27 Feb 2024
L+M-24: Building a Dataset for Language + Molecules @ ACL 2024 Carl Edwards Qingyun Wang Lawrence Zhao Heng Ji 119 22 0 22 Feb 2024
LlaSMol: Advancing Large Language Models for Chemistry with a Large-Scale, Comprehensive, High-Quality Instruction Tuning Dataset Botao Yu Frazier N. Baker Ziqi Chen Xia Ning Huan Sun LM&MA 114 51 0 14 Feb 2024
MolTC: Towards Molecular Relational Modeling In Language Models Sihang Li Shuai Zhang Chang Wu Zhengyi Yang Zhiyuan Liu Changhao Nai Kun Wang Wenjie Du Xiang Wang 174 23 0 06 Feb 2024
EXGC: Bridging Efficiency and Explainability in Graph Condensation Sihang Li Xinglin Li Yongduo Sui Yuan Gao Guibin Zhang Kun Wang Xiang Wang Xiangnan He DD 119 21 0 05 Feb 2024
Few-Shot Learning on Graphs: from Meta-learning to Pre-training and Prompting Xingtong Yu Yuan Fang Zemin Liu Yuxia Wu Zhihao Wen Jianyuan Bo Xinming Zhang Steven C. H. Hoi VLM 62 5 0 02 Feb 2024