Title
Exploring zero-shot structure-based protein fitness prediction Arnav Sharma Anthony Gitter 26 0 0 23 Apr 2025
DapPep: Domain Adaptive Peptide-agnostic Learning for Universal T-cell Receptor-antigen Binding Affinity Prediction Jiangbin Zheng Qianhui Xu Ruichen Xia Stan Z. Li 74 0 0 26 Nov 2024
Pan-protein Design Learning Enables Task-adaptive Generalization for Low-resource Enzyme Design Jiangbin Zheng Ge Wang Han Zhang Stan Z. Li 68 0 0 26 Nov 2024
MetaEnzyme: Meta Pan-Enzyme Learning for Task-Adaptive Redesign Jiangbin Zheng Han Zhang Qianqing Xu An-Ping Zeng Stan Z. Li 32 3 0 05 Aug 2024
Learning to Predict Mutation Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning Lirong Wu Yijun Tian Haitao Lin Yufei Huang Siyuan Li Nitesh V. Chawla Stan Z. Li 42 4 0 16 May 2024
PPFlow: Target-aware Peptide Design with Torsional Flow Matching Haitao Lin Odin Zhang Huifeng Zhao Dejun Jiang Lirong Wu Zicheng Liu Yufei Huang Stan Z. Li 57 12 0 05 Mar 2024
MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding Lirong Wu Yijun Tian Yufei Huang Siyuan Li Haitao Lin Nitesh V. Chawla Stan Z. Li 34 22 0 22 Feb 2024
Re-Dock: Towards Flexible and Realistic Molecular Docking with Diffusion Bridge Yufei Huang Odin Zhang Lirong Wu Cheng Tan Haitao Lin Zhangyang Gao Siyuan Li Stan. Z. Li DiffM 29 6 0 18 Feb 2024
PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction Lirong Wu Yufei Huang Cheng Tan Zhangyang Gao Bozhen Hu Haitao Lin Zicheng Liu Stan Z. Li 32 11 0 13 Feb 2024
Automated Graph Self-supervised Learning via Multi-teacher Knowledge Distillation Lirong Wu Yufei Huang Haitao Lin Zicheng Liu Tianyu Fan Stan Z. Li SSL 56 5 0 05 Oct 2022