BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs

5 October 2023

Papers citing "BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs"

8 / 8 papers shown

Title
A Text-guided Protein Design Framework Shengchao Liu Yanjing Li Zhuoxinran Li A. Gitter Yutao Zhu ... Arvind Ramanathan Chaowei Xiao Jian Tang Hongyu Guo Anima Anandkumar 103 64 0 09 Feb 2023
ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts Minghao Xu Xinyu Yuan Santiago Miret Jian Tang AI4TS 71 102 0 28 Jan 2023
Translation between Molecules and Natural Language Carl Edwards T. Lai Kevin Ros Garrett Honke Kyunghyun Cho Heng Ji 99 164 0 25 Apr 2022
OntoProtein: Protein Pretraining With Gene Ontology Embedding Ningyu Zhang Zhen Bi Xiaozhuan Liang Shuyang Cheng Haosen Hong Shumin Deng J. Lian Qiang Zhang Huajun Chen 134 93 0 23 Jan 2022
Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction Guofeng Lv Zhiqiang Hu Yanguang Bi Shaoting Zhang 31 51 0 14 May 2021
Molecular representation learning with language models and domain-relevant auxiliary tasks Benedek Fabian T. Edlich H. Gaspar Marwin H. S. Segler Joshua Meyers Marco Fiscato Mohamed Ahmed 68 128 0 26 Nov 2020
Inductive Relation Prediction by Subgraph Reasoning Komal K. Teru E. Denis William L. Hamilton NAI AI4CE 78 394 0 16 Nov 2019
Embedding Entities and Relations for Learning and Inference in Knowledge Bases Bishan Yang Wen-tau Yih Xiaodong He Jianfeng Gao Li Deng NAI 95 3,197 0 20 Dec 2014