Joint Design of Protein Sequence and Structure based on Motifs

Joint Design of Protein Sequence and Structure based on Motifs

4 October 2023

Wenxian Shi

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Papers citing "Joint Design of Protein Sequence and Structure based on Motifs"

10 / 10 papers shown

Title
MotifBench: A standardized protein design benchmark for motif-scaffolding problems Zhuoqi Zheng Bo Zhang Kieran Didi Kevin K. Yang Jason Yim Joseph L. Watson Hai-Feng Chen Brian L. Trippe 79 1 0 20 Feb 2025
Protein Sequence and Structure Co-Design with Equivariant Translation Chence Shi Chuanrui Wang Jiarui Lu Bozitao Zhong Jian Tang DiffM 54 47 0 17 Oct 2022
Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem Brian L. Trippe Jason Yim D. Tischer D. Baker Tamara Broderick Regina Barzilay Tommi Jaakkola DiffM 74 239 0 08 Jun 2022
Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models N. Anand Tudor Achim DiffM 236 175 0 26 May 2022
E(n) Equivariant Graph Neural Networks Victor Garcia Satorras Emiel Hoogeboom Max Welling 113 1,033 0 19 Feb 2021
BOSS: Bayesian Optimization over String Spaces Henry B. Moss Daniel Beck Javier I. González David S. Leslie Paul Rayson 56 69 0 02 Oct 2020
Learning from Protein Structure with Geometric Vector Perceptrons Bowen Jing Stephan Eismann Patricia Suriana Raphael J. L. Townshend R. Dror GNN 3DV 69 488 0 03 Sep 2020
ProGen: Language Modeling for Protein Generation Ali Madani Bryan McCann Nikhil Naik N. Keskar N. Anand Raphael R. Eguchi Po-Ssu Huang R. Socher 66 288 0 08 Mar 2020
Model Inversion Networks for Model-Based Optimization Aviral Kumar Sergey Levine OffRL 90 100 0 31 Dec 2019
Conditioning by adaptive sampling for robust design David H. Brookes Hahnbeom Park Jennifer Listgarten 69 199 0 29 Jan 2019