Improving Protein Optimization with Smoothed Fitness Landscapes

Improving Protein Optimization with Smoothed Fitness Landscapes

2 July 2023

Raman Samusevich

Regina Barzilay

Ila Fiete

Papers citing "Improving Protein Optimization with Smoothed Fitness Landscapes"

7 / 7 papers shown

Title
Energy Matching: Unifying Flow Matching and Energy-Based Models for Generative Modeling Michal Balcerak Tamaz Amiranashvili Suprosanna Shit Antonio Terpin Sebastian Kaltenbach Sebastian Kaltenbach Petros Koumoutsakos Bjoern H. Menze DiffM 37 1 0 14 Apr 2025
U-net based prediction of cerebrospinal fluid distribution and ventricular reflux grading Melanie Rieff Fabian Holzberger Oksana Lapina Geir Ringstad Lars Magnus Valnes Bogna Warsza Kent-Andre Mardal Per Kristian Eide Barbara Wohlmuth 46 0 0 06 Oct 2024
Variational Search Distributions Daniel M. Steinberg Rafael Oliveira Cheng Soon Ong Edwin V. Bonilla 38 0 0 10 Sep 2024
Unlocking Guidance for Discrete State-Space Diffusion and Flow Models Hunter Nisonoff Junhao Xiong Stephan Allenspach Jennifer Listgarten 68 32 0 03 Jun 2024
Importance Weighted Expectation-Maximization for Protein Sequence Design Zhenqiao Song Lei Li 45 18 0 30 Apr 2023
Tranception: protein fitness prediction with autoregressive transformers and inference-time retrieval Pascal Notin M. Dias J. Frazer Javier Marchena-Hurtado Aidan Gomez D. Marks Y. Gal 60 180 0 27 May 2022
Local Latent Space Bayesian Optimization over Structured Inputs Natalie Maus Haydn Thomas Jones Juston Moore Matt J. Kusner John Bradshaw Jacob R. Gardner BDL 61 70 0 28 Jan 2022