Title
Uni-AIMS: AI-Powered Microscopy Image Analysis Yanhui Hong Nan Wang Zhiyi Xia Haoyi Tao Xi Fang ... Shengyu Li Ziqi Chen Zezhong Zhang Guolin Ke Linfeng Zhang 26 0 0 11 May 2025
Histo-Miner: Deep Learning based Tissue Features Extraction Pipeline from H&E Whole Slide Images of Cutaneous Squamous Cell Carcinoma Lucas Sancéré Carina Lorenz Doris Helbig Oana-Diana Persa Sonja Dengler ... Martim Laimer Anne Fröhlich Jennifer Landsberg Johannes Brägelmann Katarzyna Bozek 49 0 0 07 May 2025
Automating tumor-infiltrating lymphocyte assessment in breast cancer histopathology images using QuPath: a transparent and accessible machine learning pipeline M. Tafavvoghi L. A. Bongo André Berli Delgado N. Shvetsov Anders Sildnes Line Moi Lill-ToveRasmussen Busund Kajsa Møllersen 35 0 0 23 Apr 2025
APSeg: Auto-Prompt Model with Acquired and Injected Knowledge for Nuclear Instance Segmentation and Classification Liying Xu Hongliang He Wei Han Hanbin Huang Siwei Feng Guohong Fu VLM 67 0 0 03 Apr 2025
CellVTA: Enhancing Vision Foundation Models for Accurate Cell Segmentation and Classification Yang Yang Xijie Xu Yixun Zhou Jie Zheng ViT 40 0 0 01 Apr 2025
A Multi-Stage Auto-Context Deep Learning Framework for Tissue and Nuclei Segmentation and Classification in H&E-Stained Histological Images of Advanced Melanoma Nima Torbati Anastasia Meshcheryakova Diana Mechtcheriakova Amirreza Mahbod 49 0 0 31 Mar 2025
Revisiting Automatic Data Curation for Vision Foundation Models in Digital Pathology Boqi Chen Cédric Vincent-Cuaz Lydia A. Schoenpflug Manuel Madeira Lisa Fournier ... D. Thanou V. Koelzer Pascal Frossard Gabriele Campanella Gunnar Rätsch 51 1 0 24 Mar 2025
Cracking the PUMA Challenge in 24 Hours with CellViT++ and nnU-Net Negar Shahamiri Moritz Rempe Lukas Heine Jens Kleesiek Fabian Horst 51 0 0 15 Mar 2025
COIN: Confidence Score-Guided Distillation for Annotation-Free Cell Segmentation Sanghyun Jo Seo Jin Lee Seungwoo Lee Seohyung Hong Hyungseok Seo Kyungsu Kim 53 0 0 14 Mar 2025
Prediction of Frozen Region Growth in Kidney Cryoablation Intervention Using a 3D Flow-Matching Model Siyeop Yoon Y. Oh Matthew Tivnan S. Song Pengfei Jin Sekeun KimHyun Jin Cho Hyun Jin Cho Dufan Wu Raul Uppot Quanzheng Li 49 0 0 06 Mar 2025
A Lightweight and Extensible Cell Segmentation and Classification Model for Whole Slide Images N. Shvetsov T. Kilvaer M. Tafavvoghi Anders Sildnes Kajsa Møllersen Lill-ToveRasmussen Busund L. A. Bongo VLM 71 1 0 26 Feb 2025
Advancing Oyster Phenotype Segmentation with Multi-Network Ensemble and Multi-Scale mechanism Wenli Yang Yanyu Chen Andrew Trotter Byeong Kang 41 0 0 20 Jan 2025
Segmentation of Muscularis Propria in Colon Histopathology Images Using Vision Transformers for Hirschsprung's Disease Youssef Megahed Anthony Fuller Saleh Abou-Alwan Dina El Demellawy Adrian D. C. Chan MedIm 28 0 0 31 Dec 2024
CellSeg1: Robust Cell Segmentation with One Training Image Peilin Zhou Bo Du Yongchao Xu VLM 75 1 0 02 Dec 2024
CellPilot Philipp Endres Valentin Koch Julia A. Schnabel Carsten Marr VLM MedIm 76 0 0 23 Nov 2024
Automated Classification of Cell Shapes: A Comparative Evaluation of Shape Descriptors V. Vadori A. Peruffo Jean-Marie Graic L. Finos Enrico Grisan 21 0 0 01 Nov 2024
How Good Are We? Evaluating Cell AI Foundation Models in Kidney Pathology with Human-in-the-Loop Enrichment Junlin Guo Siqi Lu Can Cui Ruining Deng Tianyuan Yao ... Catie Chang Mitchell Wilkes Mengmeng Yin Haichun Yang Yuankai Huo MedIm 57 1 0 31 Oct 2024
CoTCoNet: An Optimized Coupled Transformer-Convolutional Network with an Adaptive Graph Reconstruction for Leukemia Detection Chandravardhan Singh Raghaw Arnav Sharma Shubhi Bansal Mohammad Zia Ur Rehman Nagendra Kumar MedIm 44 9 0 11 Oct 2024
MorphoSeg: An Uncertainty-Aware Deep Learning Method for Biomedical Segmentation of Complex Cellular Morphologies Tianhao Zhang Heather J. McCourty Berardo M. Sanchez-Tafolla Anton Nikolaev Lyudmila Mihaylova 23 0 0 25 Sep 2024
NuSegDG: Integration of Heterogeneous Space and Gaussian Kernel for Domain-Generalized Nuclei Segmentation Zhenye Lou Qing Xu Zekun Jiang Xiangjian He Zhen Chen Yi Wang Chenxin Li Maggie M. He Wenting Duan 40 1 0 21 Aug 2024
NuLite -- Lightweight and Fast Model for Nuclei Instance Segmentation and Classification C. Tommasino Cristiano Russo A. M. Rinaldi 47 0 0 03 Aug 2024
Exploiting Scale-Variant Attention for Segmenting Small Medical Objects Wei Dai Rui Liu Zixuan Wu Tianyi Wu Min Wang Junxian Zhou Yixuan Yuan Jun Liu 34 4 0 10 Jul 2024
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis Guillaume Jaume Paul Doucet Andrew H. Song Ming Y. Lu Cristina Almagro-Pérez ... Anurag J. Vaidya Richard J. Chen Drew F. K. Williamson Ahrong Kim Faisal Mahmood 51 30 0 23 Jun 2024
STimage-1K4M: A histopathology image-gene expression dataset for spatial transcriptomics Jiawen Chen Muqing Zhou Wenrong Wu Jinwei Zhang Yun Li Didong Li 38 6 0 10 Jun 2024
Immunocto: a massive immune cell database auto-generated for histopathology Mikaël Simard Zhuoyan Shen Maria A. Hawkins C. Collins-Fekete Maria A. Hawkins Charles-Antoine Collins-Fekete 41 1 0 03 Jun 2024
BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once Theodore Zhao Yu Gu Jianwei Yang Naoto Usuyama Ho Hin Lee ... B. Piening Carlo Bifulco Mu-Hsin Wei Hoifung Poon Sheng Wang MedIm 38 23 0 21 May 2024
How to build the best medical image segmentation algorithm using foundation models: a comprehensive empirical study with Segment Anything Model Han Gu Haoyu Dong Jichen Yang Maciej A. Mazurowski MedIm VLM 80 14 0 15 Apr 2024
ViTGaze: Gaze Following with Interaction Features in Vision Transformers Yuehao Song Xinggang Wang Jingfeng Yao Wenyu Liu Jinglin Zhang Xiangmin Xu ViT 52 2 0 19 Mar 2024
Morphological Profiling for Drug Discovery in the Era of Deep Learning Qiaosi Tang R. Ratnayake Gustavo Seabra Zhe Jiang Ruogu Fang ... Tamer Kahveci Jiang Bian Chenglong Li H. Luesch Yanjun Li 33 4 0 13 Dec 2023
Unleashing the Power of Prompt-driven Nucleus Instance Segmentation Zhongyi Shui Yunlong Zhang Kai Yao Chenglu Zhu Sunyi Zheng Jingxiong Li Honglin Li Yuxuan Sun Ruizhe Guo Lin Yang 46 10 0 27 Nov 2023
A General-Purpose Self-Supervised Model for Computational Pathology Richard J. Chen Tong Ding Ming Y. Lu Drew F. K. Williamson Guillaume Jaume ... Judy J. Wang Walt Williams L. Le Georg Gerber Faisal Mahmood MedIm 28 42 0 29 Aug 2023
Segment anything, from space? Simiao Ren Francesco Luzi Saad Lahrichi Kaleb Kassaw L. Collins Kyle Bradbury Jordan M. Malof VLM 31 43 0 25 Apr 2023
Structure Embedded Nucleus Classification for Histopathology Images Wei Lou Xiang Wan Guanbin Li X. Lou Chenghang Li Feng Gao Haofeng Li 18 9 0 22 Feb 2023
Emerging Properties in Self-Supervised Vision Transformers Mathilde Caron Hugo Touvron Ishan Misra Hervé Jégou Julien Mairal Piotr Bojanowski Armand Joulin 383 5,818 0 29 Apr 2021
PanNuke Dataset Extension, Insights and Baselines Jevgenij Gamper Navid Alemi Koohbanani Ksenija Benes S. Graham Mostafa Jahanifar S. Khurram A. Azam K. Hewitt Nasir M. Rajpoot 124 175 0 24 Mar 2020