GIMLET: A Unified Graph-Text Model for Instruction-Based Molecule Zero-Shot Learning

28 May 2023

Lingpeng Kong

Qi Liu

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Papers citing "GIMLET: A Unified Graph-Text Model for Instruction-Based Molecule Zero-Shot Learning"

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Title
Integrating Structural and Semantic Signals in Text-Attributed Graphs with BiGTex Azadeh Beiranvand Seyed Mehdi Vahidipour 34 0 0 16 Apr 2025
BioMaze: Benchmarking and Enhancing Large Language Models for Biological Pathway Reasoning Haiteng Zhao Chang Ma FangZhi Xu Lingpeng Kong Zhi-Hong Deng LRM 52 2 0 23 Feb 2025
Strada-LLM: Graph LLM for traffic prediction Seyed Mohamad Moghadas Yangxintong Lyu Bruno Cornelis Alexandre Alahi Adrian Munteanu AI4TS 63 0 0 17 Feb 2025
GOFA: A Generative One-For-All Model for Joint Graph Language Modeling Lecheng Kong Jiarui Feng Hao Liu Chengsong Huang Jiaxin Huang Yixin Chen Muhan Zhang AI4CE 77 6 0 12 Jul 2024
MolX: Enhancing Large Language Models for Molecular Learning with A Multi-Modal Extension Khiem Le Zhichun Guo Kaiwen Dong Xiaobao Huang B. Nan Roshni G. Iyer Xiangliang Zhang Olaf Wiest Wei Wang Nitesh V. Chawla 41 8 0 10 Jun 2024
A Survey of Large Language Models on Generative Graph Analytics: Query, Learning, and Applications Wenbo Shang Xin Huang 29 9 0 23 Apr 2024
Microstructures and Accuracy of Graph Recall by Large Language Models Yanbang Wang Hejie Cui Jon M. Kleinberg 42 2 0 19 Feb 2024
Large Language Models as Topological Structure Enhancers for Text-Attributed Graphs Shengyin Sun Yuxiang Ren Chen Ma Xuecang Zhang 115 20 0 24 Nov 2023
A Survey of Graph Meets Large Language Model: Progress and Future Directions Yuhan Li Zhixun Li Peisong Wang Jia Li Xiangguo Sun Hongtao Cheng Jeffrey Xu Yu 46 56 0 21 Nov 2023
UniTime: A Language-Empowered Unified Model for Cross-Domain Time Series Forecasting Xu Liu Junfeng Hu Yuan N. Li Shizhe Diao Keli Zhang Bryan Hooi Roger Zimmermann AI4TS 27 77 0 15 Oct 2023
A Comprehensive Survey on Deep Graph Representation Learning Wei Ju Zheng Fang Yiyang Gu Zequn Liu Qingqing Long ... Jingyang Yuan Yusheng Zhao Yifan Wang Xiao Luo Ming Zhang GNN AI4TS 54 141 0 11 Apr 2023
Enhancing Activity Prediction Models in Drug Discovery with the Ability to Understand Human Language Philipp Seidl Andreu Vall Sepp Hochreiter G. Klambauer 65 37 0 06 Mar 2023
A Molecular Multimodal Foundation Model Associating Molecule Graphs with Natural Language Bing-Huang Su Dazhao Du Zhao-Qing Yang Yujie Zhou Jiangmeng Li Anyi Rao Haoran Sun Zhiwu Lu Ji-Rong Wen 46 108 0 12 Sep 2022
Training language models to follow instructions with human feedback Long Ouyang Jeff Wu Xu Jiang Diogo Almeida Carroll L. Wainwright ... Amanda Askell Peter Welinder Paul Christiano Jan Leike Ryan J. Lowe OSLM ALM 342 12,003 0 04 Mar 2022
Improving Molecular Contrastive Learning via Faulty Negative Mitigation and Decomposed Fragment Contrast Yuyang Wang Rishikesh Magar Chen Liang A. Farimani 46 78 0 18 Feb 2022
GRPE: Relative Positional Encoding for Graph Transformer Wonpyo Park Woonggi Chang Donggeon Lee Juntae Kim Seung-won Hwang 41 75 0 30 Jan 2022
Multitask Prompted Training Enables Zero-Shot Task Generalization Victor Sanh Albert Webson Colin Raffel Stephen H. Bach Lintang Sutawika ... T. Bers Stella Biderman Leo Gao Thomas Wolf Alexander M. Rush LRM 215 1,661 0 15 Oct 2021
Pre-training Molecular Graph Representation with 3D Geometry Shengchao Liu Hanchen Wang Weiyang Liu Joan Lasenby Hongyu Guo Jian Tang 126 302 0 07 Oct 2021
Exploiting Cloze Questions for Few Shot Text Classification and Natural Language Inference Timo Schick Hinrich Schütze 258 1,589 0 21 Jan 2020
Graph Convolutional Policy Network for Goal-Directed Molecular Graph Generation Jiaxuan You Bowen Liu Rex Ying Vijay S. Pande J. Leskovec GNN 206 885 0 07 Jun 2018
MoleculeNet: A Benchmark for Molecular Machine Learning Zhenqin Wu Bharath Ramsundar Evan N. Feinberg Joseph Gomes C. Geniesse Aneesh S. Pappu K. Leswing Vijay S. Pande OOD 231 1,780 0 02 Mar 2017