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Evaluating Graph Neural Networks for Link Prediction: Current Pitfalls and New Benchmarking

18 June 2023

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Papers citing "Evaluating Graph Neural Networks for Link Prediction: Current Pitfalls and New Benchmarking"

31 / 31 papers shown

Title
BioMol-MQA: A Multi-Modal Question Answering Dataset For LLM Reasoning Over Bio-Molecular Interactions Saptarshi Sengupta Shuhua Yang Paul Kwong Yu Fali Wang Suhang Wang 61 0 0 06 Jun 2025
MatMMFuse: Multi-Modal Fusion model for Material Property Prediction Abhiroop Bhattacharya Sylvain G. Cloutier AI4CE 62 0 0 30 Apr 2025
Heuristic Methods are Good Teachers to Distill MLPs for Graph Link Prediction Zongyue Qin Shichang Zhang Mingxuan Ju Tong Zhao Neil Shah Yizhou Sun 56 0 0 08 Apr 2025
Mixture of Link Predictors on Graphs Li Ma Haoyu Han Juanhui Li Harry Shomer Hui Liu Xiaofeng Gao Jiliang Tang 150 0 0 03 Jan 2025
Attribute-Enhanced Similarity Ranking for Sparse Link Prediction João Mattos Zexi Huang Mert Kosan Ambuj Singh A. Silva 160 1 0 29 Nov 2024
Dual-Frequency Filtering Self-aware Graph Neural Networks for Homophilic and Heterophilic Graphs Yachao Yang Yanfeng Sun Jipeng Guo Junbin Gao Shaofan Wang Fujiao Ju Baocai Yin 127 0 0 18 Nov 2024
Reconsidering the Performance of GAE in Link Prediction Weishuo Ma Yanbo Wang Xiang Wang Muhan Zhang 97 1 0 06 Nov 2024
BSG4Bot: Efficient Bot Detection based on Biased Heterogeneous Subgraphs Hao Miao Zida Liu Jun Gao 81 0 0 07 Oct 2024
Enhancing Future Link Prediction in Quantum Computing Semantic Networks through LLM-Initiated Node Features Gilchan Park Paul Baity Byung-Jun Yoon Adolfy Hoisie 113 0 0 05 Oct 2024
PROXI: Challenging the GNNs for Link Prediction Astrit Tola Jack Myrick Baris Coskunuzer 90 0 0 02 Oct 2024
On the Impact of Feature Heterophily on Link Prediction with Graph Neural Networks Jiong Zhu Gaotang Li Yao-An Yang Jing Zhu Xuehao Cui Danai Koutra 77 4 0 26 Sep 2024
Promoting Fairness in Link Prediction with Graph Enhancement Yezi Liu Hanning Chen Mohsen Imani 78 3 0 13 Sep 2024
Sub-graph Based Diffusion Model for Link Prediction Hang Li Wei Jin Geri Skenderi Harry Shomer Wenzhuo Tang Wenqi Fan Jiliang Tang DiffM 65 0 0 13 Sep 2024
KAGNNs: Kolmogorov-Arnold Networks meet Graph Learning Roman Bresson Giannis Nikolentzos G. Panagopoulos Michail Chatzianastasis Jun Pang Michalis Vazirgiannis 184 52 0 26 Jun 2024
Text-space Graph Foundation Models: Comprehensive Benchmarks and New Insights Zhikai Chen Haitao Mao Jingzhe Liu Yu Song Bingheng Li ... Bahare Fatemi Anton Tsitsulin Bryan Perozzi Hui Liu Jiliang Tang 106 18 0 15 Jun 2024
Benchmarking Spectral Graph Neural Networks: A Comprehensive Study on Effectiveness and Efficiency Ningyi Liao Haoyu Liu Zulun Zhu Siqiang Luo L. Lakshmanan 110 2 0 14 Jun 2024
Efficient Neural Common Neighbor for Temporal Graph Link Prediction Xiaohui Zhang Yanbo Wang Xiyuan Wang Muhan Zhang 78 6 0 12 Jun 2024
GENIE: Watermarking Graph Neural Networks for Link Prediction Venkata Sai Pranav Bachina Ankit Gangwal Aaryan Ajay Sharma Charu Sharma 150 2 0 07 Jun 2024
Cross-Domain Graph Data Scaling: A Showcase with Diffusion Models Wenzhuo Tang Haitao Mao Danial Dervovic Ivan Brugere Saumitra Mishra Yuying Xie Jiliang Tang 79 3 0 04 Jun 2024
HC-GAE: The Hierarchical Cluster-based Graph Auto-Encoder for Graph Representation Learning Zhuo Xu Lu Bai Lixin Cui Ming Li Yue Wang Edwin R. Hancock GNN 79 1 0 23 May 2024
A unifying primary framework for quantum graph neural networks from quantum graph states Ammar Daskin GNN 87 1 0 20 Feb 2024
Masked Graph Autoencoder with Non-discrete Bandwidths Zi-qiang Zhao Yuhua Li Yixiong Zou Jiliang Tang Ruixuan Li 86 12 0 06 Feb 2024
Position: Graph Foundation Models are Already Here Haitao Mao Zhikai Chen Wenzhuo Tang Jianan Zhao Yao Ma Tong Zhao Neil Shah Mikhail Galkin Jiliang Tang AI4CE 155 44 0 03 Feb 2024
Learning Scalable Structural Representations for Link Prediction with Bloom Signatures Tianyi Zhang Haoteng Yin Rongzhe Wei Pan Li Anshumali Shrivastava AI4CE 63 1 0 28 Dec 2023
LPFormer: An Adaptive Graph Transformer for Link Prediction Harry Shomer Yao Ma Haitao Mao Juanhui Li Bo Wu Jiliang Tang 113 8 0 17 Oct 2023
A Topological Perspective on Demystifying GNN-Based Link Prediction Performance Yu Wang Tong Zhao Yuying Zhao Yunchao Liu Xueqi Cheng Neil Shah Hanyu Wang 83 10 0 06 Oct 2023
Revisiting Link Prediction: A Data Perspective Haitao Mao Juanhui Li Harry Shomer Bingheng Li Wenqi Fan Yao Ma Tong Zhao Neil Shah Jiliang Tang 118 30 0 01 Oct 2023
Pure Message Passing Can Estimate Common Neighbor for Link Prediction Kaiwen Dong Zhichun Guo Nitesh Chawla 117 8 0 02 Sep 2023
Demystifying Structural Disparity in Graph Neural Networks: Can One Size Fit All? Haitao Mao Zhikai Chen Wei Jin Haoyu Han Yao Ma Tong Zhao Neil Shah Jiliang Tang 118 36 0 02 Jun 2023
Benchmarking Graph Neural Networks Vijay Prakash Dwivedi Chaitanya K. Joshi Anh Tuan Luu T. Laurent Yoshua Bengio Xavier Bresson 645 958 0 02 Mar 2020
A Re-evaluation of Knowledge Graph Completion Methods Zhiqing Sun Shikhar Vashishth Soumya Sanyal Partha P. Talukdar Yiming Yang 92 170 0 10 Nov 2019