Gene Set Summarization using Large Language Models

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Gene Set Summarization using Large Language Models

21 May 2023

marcin p. joachimiak

Christopher J. Mungall

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Papers citing "Gene Set Summarization using Large Language Models"

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Title
Chemical classification program synthesis using generative artificial intelligence Christopher J. Mungall Adnan Malik Daniel R. Korn Justin T Reese Noel M. O'Boyle Noel Janna Hastings 64 0 0 24 May 2025
Do LLMs Dream of Ontologies? Marco Bombieri Paolo Fiorini Simone Paolo Ponzetto M. Rospocher CLL 84 3 0 26 Jan 2024
LitSumm: Large language models for literature summarisation of non-coding RNAs Andrew Green C. Ribas Nancy Ontiveros-Palacios Sam Griffiths-Jones Anton I. Petrov Alex Bateman Blake Sweeney 74 4 0 06 Nov 2023
Evaluation of large language models for discovery of gene set function Mengzhou Hu Sahar Alkhairy Ingoo Lee Rudolf T. Pillich Dylan Fong Kevin Smith Robin Bachelder T. Ideker Dexter Pratt LM&MA 59 42 0 07 Sep 2023
Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning J. H. Caufield Harshad B. Hegde Vincent Emonet N. Harris marcin p. joachimiak ... Sierra A T Moxon Justin P Reese M. Haendel Peter N. Robinson Christopher J. Mungall 76 87 0 05 Apr 2023
Emergent Abilities of Large Language Models Jason W. Wei Yi Tay Rishi Bommasani Colin Raffel Barret Zoph ... Tatsunori Hashimoto Oriol Vinyals Percy Liang J. Dean W. Fedus ELM ReLM LRM 288 2,518 0 15 Jun 2022
BioBERT: a pre-trained biomedical language representation model for biomedical text mining Jinhyuk Lee Wonjin Yoon Sungdong Kim Donghyeon Kim Sunkyu Kim Chan Ho So Jaewoo Kang OOD 182 5,674 0 25 Jan 2019