Dirichlet Diffusion Score Model for Biological Sequence Generation

Dirichlet Diffusion Score Model for Biological Sequence Generation

18 May 2023

Papers citing "Dirichlet Diffusion Score Model for Biological Sequence Generation"

14 / 14 papers shown

Title
DDPS: Discrete Diffusion Posterior Sampling for Paths in Layered Graphs Hao Luan See-Kiong Ng Chun Kai Ling 52 0 0 29 Apr 2025
HELM: Hierarchical Encoding for mRNA Language Modeling Mehdi Yazdani-Jahromi Mangal Prakash Tommaso Mansi Artem Moskalev Rui Liao 87 2 0 13 Mar 2025
Block Diffusion: Interpolating Between Autoregressive and Diffusion Language Models Marianne Arriola Aaron Gokaslan Justin T Chiu Zhihan Yang Zhixuan Qi Jiaqi Han S. Sahoo Volodymyr Kuleshov DiffM 69 4 0 12 Mar 2025
Theoretical Benefit and Limitation of Diffusion Language Model Guhao Feng Yihan Geng Jian-Yu Guan Wei Yu Wu Liwei Wang Di He DiffM 55 0 0 13 Feb 2025
Simplified and Generalized Masked Diffusion for Discrete Data Jiaxin Shi Kehang Han Z. Wang Arnaud Doucet Michalis K. Titsias DiffM 76 62 0 17 Jan 2025
Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design Chenyu Wang Masatoshi Uehara Yichun He Amy Wang Tommaso Biancalani Avantika Lal Tommi Jaakkola Sergey Levine Hanchen Wang Aviv Regev 53 8 0 17 Oct 2024
Think While You Generate: Discrete Diffusion with Planned Denoising Sulin Liu Juno Nam Andrew Campbell Hannes Stärk Yilun Xu Tommi Jaakkola Rafael Gómez-Bombarelli DiffM 38 6 0 08 Oct 2024
How Discrete and Continuous Diffusion Meet: Comprehensive Analysis of Discrete Diffusion Models via a Stochastic Integral Framework Yinuo Ren Haoxuan Chen Grant M. Rotskoff Lexing Ying 47 3 0 04 Oct 2024
Unlocking Guidance for Discrete State-Space Diffusion and Flow Models Hunter Nisonoff Junhao Xiong Stephan Allenspach Jennifer Listgarten 55 31 0 03 Jun 2024
Categorical Flow Matching on Statistical Manifolds Chaoran Cheng Jiahan Li Jian-wei Peng Ge Liu 61 10 0 26 May 2024
A Continuous Time Framework for Discrete Denoising Models Andrew Campbell Joe Benton Valentin De Bortoli Tom Rainforth George Deligiannidis Arnaud Doucet DiffM 185 134 0 30 May 2022
Diffusion-LM Improves Controllable Text Generation Xiang Lisa Li John Thickstun Ishaan Gulrajani Percy Liang Tatsunori B. Hashimoto AI4CE 173 773 0 27 May 2022
Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models N. Anand Tudor Achim DiffM 187 173 0 26 May 2022
Argmax Flows and Multinomial Diffusion: Learning Categorical Distributions Emiel Hoogeboom Didrik Nielsen P. Jaini Patrick Forré Max Welling DiffM 207 394 0 10 Feb 2021