HD-Bind: Encoding of Molecular Structure with Low Precision,
Hyperdimensional Binary Representations

HD-Bind: Encoding of Molecular Structure with Low Precision, Hyperdimensional Binary Representations

27 March 2023

Jonathan E. Allen

Behnam Khaleghi

Weihong Xu

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Papers citing "HD-Bind: Encoding of Molecular Structure with Low Precision, Hyperdimensional Binary Representations"

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Title
Recent advances in the Self-Referencing Embedding Strings (SELFIES) library Alston Lo R. Pollice AkshatKumar Nigam Andrew D. White Mario Krenn Alán Aspuru-Guzik 57 6 0 07 Feb 2023
Hierarchical Text-Conditional Image Generation with CLIP Latents Aditya A. Ramesh Prafulla Dhariwal Alex Nichol Casey Chu Mark Chen VLM DiffM 410 6,897 0 13 Apr 2022
SELFIES and the future of molecular string representations Mario Krenn Qianxiang Ai Senja Barthel Nessa Carson Angelo Frei ... Andrew Wang Andrew D. White Adamo Young Rose Yu A. Aspuru‐Guzik 79 157 0 31 Mar 2022
Understanding Hyperdimensional Computing for Parallel Single-Pass Learning Tao Yu Yichi Zhang Zhiru Zhang Christopher De Sa 64 30 0 10 Feb 2022
High-Throughput Virtual Screening of Small Molecule Inhibitors for SARS-CoV-2 Protein Targets with Deep Fusion Models Garrett A. Stevenson Derek Jones Hyojin Kim W. D. Bennett B. Bennion ... A. Zemla Xiaohua Zhang Fangqiang Zhu F. Lightstone Jonathan E. Allen 41 16 0 09 Apr 2021
ChemBERTa: Large-Scale Self-Supervised Pretraining for Molecular Property Prediction Seyone Chithrananda Gabriel Grand Bharath Ramsundar AI4CE 88 409 0 19 Oct 2020
A Theoretical Perspective on Hyperdimensional Computing Anthony Thomas S. Dasgupta Tajana Simunic 47 83 0 14 Oct 2020
Improved Protein-ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference Derek Jones Hyojin Kim Xiaohua Zhang A. Zemla Garrett A. Stevenson W. D. Bennett D. Kirshner Sergio E. Wong F. Lightstone Jonathan E. Allen AI4CE 36 193 0 17 May 2020
Classification using Hyperdimensional Computing: A Review Lulu Ge Keshab K. Parhi 42 182 0 19 Apr 2020
In-memory hyperdimensional computing G. Karunaratne Manuel Le Gallo G. Cherubini Luca Benini Abbas Rahimi Abu Sebastian 70 251 0 04 Jun 2019
PotentialNet for Molecular Property Prediction Evan N. Feinberg Debnil Sur Zhenqin Wu B. Husic Huanghao Mai Yang Li Saisai Sun Jianyi Yang Bharath Ramsundar Vijay S. Pande 59 365 0 12 Mar 2018
Development and evaluation of a deep learning model for protein-ligand binding affinity prediction Marta M. Stepniewska-Dziubinska P. Zielenkiewicz P. Siedlecki 40 441 0 19 Dec 2017
MoleculeNet: A Benchmark for Molecular Machine Learning Zhenqin Wu Bharath Ramsundar Evan N. Feinberg Joseph Gomes C. Geniesse Aneesh S. Pappu K. Leswing Vijay S. Pande OOD 337 1,834 0 02 Mar 2017
Neural Machine Translation of Rare Words with Subword Units Rico Sennrich Barry Haddow Alexandra Birch 224 7,755 0 31 Aug 2015