Conditional Antibody Design as 3D Equivariant Graph Translation

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Conditional Antibody Design as 3D Equivariant Graph Translation

12 August 2022

Yang Liu

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Papers citing "Conditional Antibody Design as 3D Equivariant Graph Translation"

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Title
Decoupled Sequence and Structure Generation for Realistic Antibody Design Nayoung Kim Minsu Kim SungSoo Ahn Jinkyoo Park 102 0 0 20 Jan 2025
MAMMAL -- Molecular Aligned Multi-Modal Architecture and Language Yoel Shoshan Moshiko Raboh Michal Ozery-Flato Vadim Ratner Alex Golts ... Sharon Kurant Joseph A. Morrone Parthasarathy Suryanarayanan Michal Rosen-Zvi Efrat Hexter 105 1 0 28 Oct 2024
ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding Yijia Xiao Edward Sun Yiqiao Jin Qifan Wang Wei Wang 119 16 0 21 Aug 2024
A Survey of Geometric Graph Neural Networks: Data Structures, Models and Applications Jiaqi Han Jiacheng Cen Liming Wu Zongzhao Li Xiangzhe Kong ... Zhewei Wei Deli Zhao Yu Rong Wenbing Huang Wenbing Huang AI4CE 147 24 0 01 Mar 2024
ProtChatGPT: Towards Understanding Proteins with Large Language Models Chao Wang Hehe Fan Ruijie Quan Yi Yang 93 16 0 15 Feb 2024
Equivariant Graph Mechanics Networks with Constraints Wen-bing Huang J. Han Yu Rong Tingyang Xu Gang Hua Junzhou Huang AI4CE 77 80 0 12 Mar 2022
AntBO: Towards Real-World Automated Antibody Design with Combinatorial Bayesian Optimisation M. A. Khan Alexander I. Cowen-Rivers Antoine Grosnit Derrick-Goh-Xin Deik Philippe A. Robert ... Rasul Tutunov Dany Bou-Ammar Jun Wang Amos Storkey Haitham Bou-Ammar 159 23 0 29 Jan 2022
Deciphering antibody affinity maturation with language models and weakly supervised learning Jeffrey A. Ruffolo Jeffrey J. Gray Jeremias Sulam 43 136 0 14 Dec 2021
Independent SE(3)-Equivariant Models for End-to-End Rigid Protein Docking O. Ganea Xinyuan Huang Charlotte Bunne Yatao Bian Regina Barzilay Tommi Jaakkola Andreas Krause 109 154 0 15 Nov 2021
Iterative Refinement Graph Neural Network for Antibody Sequence-Structure Co-design Wengong Jin Jeremy Wohlwend Regina Barzilay Tommi Jaakkola 56 142 0 09 Oct 2021
Fold2Seq: A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design Yue Cao Payel Das Vijil Chenthamarakshan Pin-Yu Chen Igor Melnyk Yang Shen 69 48 0 24 Jun 2021
E(n) Equivariant Graph Neural Networks Victor Garcia Satorras Emiel Hoogeboom Max Welling 113 1,033 0 19 Feb 2021
Spherical Message Passing for 3D Graph Networks Yi Liu Limei Wang Meng Liu Xuan Zhang Bora Oztekin Shuiwang Ji GNN 74 207 0 09 Feb 2021
Directional Message Passing for Molecular Graphs Johannes Klicpera Janek Groß Stephan Günnemann 143 881 0 06 Mar 2020
Improving Molecular Design by Stochastic Iterative Target Augmentation Kevin Kaichuang Yang Wengong Jin Kyle Swanson Regina Barzilay Tommi Jaakkola 83 26 0 11 Feb 2020
Symmetry-adapted generation of 3d point sets for the targeted discovery of molecules Niklas W. A. Gebauer M. Gastegger Kristof T. Schütt 150 211 0 02 Jun 2019
Graph Attention Networks Petar Velickovic Guillem Cucurull Arantxa Casanova Adriana Romero Pietro Lio Yoshua Bengio GNN 486 20,265 0 30 Oct 2017