A graph-transformer for whole slide image classification

19 May 2022

Papers citing "A graph-transformer for whole slide image classification"

50 / 52 papers shown

Title
Histo-Miner: Deep Learning based Tissue Features Extraction Pipeline from H&E Whole Slide Images of Cutaneous Squamous Cell Carcinoma Lucas Sancéré Carina Lorenz Doris Helbig Oana-Diana Persa Sonja Dengler ... Martim Laimer Anne Fröhlich Jennifer Landsberg Johannes Brägelmann Katarzyna Bozek 44 0 0 07 May 2025
Predicting ulcer in H&E images of inflammatory bowel disease using domain-knowledge-driven graph neural network Ruiwen Ding Lin Li R. Soans Tosha Shah Radha Krishnan Marc Alexander Sze Sasha Lukyanov Yash Deshpande Antong Chen 19 0 0 13 Apr 2025
BioX-CPath: Biologically-driven Explainable Diagnostics for Multistain IHC Computational Pathology Amaya Gallagher-Syed Henry Senior Omnia Alwazzan Elena Pontarini Michele Bombardieri C. Pitzalis M. Lewis Michael Barnes Luca Rossi Gregory G. Slabaugh 41 0 0 26 Mar 2025
ModalTune: Fine-Tuning Slide-Level Foundation Models with Multi-Modal Information for Multi-task Learning in Digital Pathology Vishwesh Ramanathan Tony Xu Pushpak Pati Faruk Ahmed Maged Goubran Anne L. Martel 48 0 0 21 Mar 2025
PSA-MIL: A Probabilistic Spatial Attention-Based Multiple Instance Learning for Whole Slide Image Classification Sharon Peled Y. Maruvka Moti Freiman 38 0 0 20 Mar 2025
From Pixels to Histopathology: A Graph-Based Framework for Interpretable Whole Slide Image Analysis Alexander Weers Alexander H. Berger Laurin Lux Peter Schüffler Daniel Rueckert Johannes C. Paetzold 42 0 0 14 Mar 2025
Can We Simplify Slide-level Fine-tuning of Pathology Foundation Models? Jiawen Li Jiali Hu Qiehe Sun Renao Yan Minxi Ouyang Tian Guan Anjia Han Chao He Yonghong He MedIm 63 0 0 28 Feb 2025
A Survey of Graph Transformers: Architectures, Theories and Applications Chaohao Yuan Kangfei Zhao Ercan Engin Kuruoglu Liang Wang Tingyang Xu Wenbing Huang Deli Zhao Hong Cheng Yu Rong 55 4 0 23 Feb 2025
PathFinder: A Multi-Modal Multi-Agent System for Medical Diagnostic Decision-Making Applied to Histopathology Fatemeh Ghezloo M. S. Seyfioglu Rustin Soraki Wisdom O. Ikezogwo Beibin Li Tejoram Vivekanandan J. Elmore Ranjay Krishna Linda G. Shapiro 88 3 0 13 Feb 2025
ViLa-MIL: Dual-scale Vision-Language Multiple Instance Learning for Whole Slide Image Classification Jiangbo Shi Chen Li Tieliang Gong Yefeng Zheng Huazhu Fu VLM 60 7 0 12 Feb 2025
FOCUS: Knowledge-enhanced Adaptive Visual Compression for Few-shot Whole Slide Image Classification Zhengrui Guo Conghao Xiong Jiabo Ma Qichen Sun Lishuang Feng Jinzhuo Wang Hao Chen 179 0 0 22 Nov 2024
Sm: enhanced localization in Multiple Instance Learning for medical imaging classification Francisco M. Castro-Macías Pablo Morales-Álvarez Yunan Wu Rafael Molina Aggelos K. Katsaggelos 28 1 0 04 Oct 2024
EFCM: Efficient Fine-tuning on Compressed Models for deployment of large models in medical image analysis Shaojie Li Zhaoshuo Diao 24 0 0 18 Sep 2024
cDP-MIL: Robust Multiple Instance Learning via Cascaded Dirichlet Process Yihang Chen Tsai Hor Chan Guosheng Yin Yuming Jiang Lequan Yu 25 0 0 16 Jul 2024
Benchmarking Embedding Aggregation Methods in Computational Pathology: A Clinical Data Perspective Shengjia Chen Gabriele Campanella Abdulkadir Elmas A. Stock Jennifer Zeng ... Adam J. Schoenfeld Kuan-lin Huang Jane Houldsworth Chad M. Vanderbilt Thomas J. Fuchs 39 3 0 10 Jul 2024
GTP-4o: Modality-prompted Heterogeneous Graph Learning for Omni-modal Biomedical Representation Chenxin Li Xinyu Liu Cheng Wang Yifan Liu Weihao Yu Jing Shao Yixuan Yuan 40 13 0 08 Jul 2024
Combining Graph Neural Network and Mamba to Capture Local and Global Tissue Spatial Relationships in Whole Slide Images Ruiwen Ding Kha-Dinh Luong Erika Rodriguez Ana Cristina Araujo Lemos da Silva William Hsu Mamba 46 2 0 05 Jun 2024
Understanding differences in applying DETR to natural and medical images Yanqi Xu Yiqiu Shen C. Fernandez‐Granda Laura Heacock Krzysztof J. Geras MedIm 62 2 0 27 May 2024
Multi-Scale Heterogeneity-Aware Hypergraph Representation for Histopathology Whole Slide Images Minghao Han Xukun Zhang Dingkang Yang Tao Liu Haopeng Kuang Jinghui Feng Lihua Zhang 27 1 0 30 Apr 2024
Semantics-Aware Attention Guidance for Diagnosing Whole Slide Images Kechun Liu Wenjun Wu J. Elmore Linda G. Shapiro MedIm 40 1 0 16 Apr 2024
Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification Zhan Shi Jingwei Zhang Jun Kong Fusheng Wang MedIm 34 3 0 26 Mar 2024
Adversary-Robust Graph-Based Learning of WSIs Saba Heidari Gheshlaghi Milan Aryal Nasim Yahyasoltani Masoud Ganji OOD AAML 27 0 0 21 Mar 2024
FlowerFormer: Empowering Neural Architecture Encoding using a Flow-aware Graph Transformer Dongyeong Hwang Hyunju Kim Sunwoo Kim Kijung Shin AI4CE 50 2 0 19 Mar 2024
Re-identification from histopathology images J. Ganz Jonas Ammeling Samir Jabari Katharina Breininger Marc Aubreville 29 1 0 19 Mar 2024
Dynamic Graph Representation with Knowledge-aware Attention for Histopathology Whole Slide Image Analysis Jiawen Li Yuxuan Chen Hongbo Chu Qiehe Sun Tian Guan Anjia Han Yonghong He 32 25 0 12 Mar 2024
Cell Graph Transformer for Nuclei Classification Wei Lou Guanbin Li Xiang Wan Haofeng Li ViT MedIm 53 4 0 20 Feb 2024
Large-scale Long-tailed Disease Diagnosis on Radiology Images Qiaoyu Zheng Weike Zhao Chaoyi Wu Xiaoman Zhang Lisong Dai Hengyu Guan Yuehua Li Ya-Qin Zhang Yanfeng Wang Weidi Xie LM&MA MedIm 32 5 0 26 Dec 2023
SI-MIL: Taming Deep MIL for Self-Interpretability in Gigapixel Histopathology S. Kapse Pushpak Pati Srijan Das Jingwei Zhang Chao Chen Maria Vakalopoulou Joel H. Saltz Dimitris Samaras Rajarsi R. Gupta Prateek Prasanna 23 10 0 22 Dec 2023
Seeing the random forest through the decision trees. Supporting learning health systems from histopathology with machine learning models: Challenges and opportunities Ricardo Gonzalez Ashirbani Saha Clinton J.V. Campbell Peyman Nejat Cynthia Lokker Andrew P. Norgan 33 13 0 06 Dec 2023
Artifact-Robust Graph-Based Learning in Digital Pathology Saba Heidari Gheshlaghi Milan Aryal Nasim Yahyasoltani Masoud Ganji OOD 27 0 0 27 Oct 2023
MUSTANG: Multi-Stain Self-Attention Graph Multiple Instance Learning Pipeline for Histopathology Whole Slide Images Amaya Gallagher-Syed Luca Rossi F. Rivellese C. Pitzalis M. Lewis Michael Barnes Gregory Slabaugh 24 0 0 19 Sep 2023
HIGT: Hierarchical Interaction Graph-Transformer for Whole Slide Image Analysis Ziyu Guo Wei-Ye Zhao Shujun Wang Lequan Yu 28 13 0 14 Sep 2023
Improving diagnosis and prognosis of lung cancer using vision transformers: A scoping review Hazrat Ali Farida Mohsen Zubair Shah LM&MA MedIm 15 25 0 06 Sep 2023
RACR-MIL: Weakly Supervised Skin Cancer Grading using Rank-Aware Contextual Reasoning on Whole Slide Images A. Choudhary Angelina S. Hwang Jacob A. Kechter Krishnakant V. Saboo Blake Bordeaux ... Emma Johnson L. Swanson Dennis H. Murphree Aaron Mangold Ravishankar K. Iyer 24 0 0 29 Aug 2023
Histopathology Whole Slide Image Analysis with Heterogeneous Graph Representation Learning Tsai Hor Chan Fernando Julio Cendra Lan Ma Guosheng Yin Lequan Yu 28 44 0 09 Jul 2023
Revisiting Computer-Aided Tuberculosis Diagnosis Yun-Hai Liu Yu-Huan Wu Shi-Chen Zhang Li Liu Min-Ying Wu Ming-Ming Cheng 27 14 0 06 Jul 2023
Multi-Scale Prototypical Transformer for Whole Slide Image Classification Saisai Ding Jun Wang Juncheng Li Jun Shi MedIm 21 17 0 05 Jul 2023
Rethinking Multiple Instance Learning for Whole Slide Image Classification: A Good Instance Classifier is All You Need Linhao Qu Yingfan Ma Xiao-Zhuo Luo Manning Wang Zhijian Song VLM 19 18 0 05 Jul 2023
Multi-scale Efficient Graph-Transformer for Whole Slide Image Classification Saisai Ding Juncheng Li Jun Wang Shihui Ying Jun Shi ViT MedIm 27 7 0 25 May 2023
CAMIL: Context-Aware Multiple Instance Learning for Cancer Detection and Subtyping in Whole Slide Images Olga Fourkioti Matt De Vries Chris Bakal 30 4 0 09 May 2023
Unsupervised Mutual Transformer Learning for Multi-Gigapixel Whole Slide Image Classification S. Javed Arif Mahmood Talha Qaiser J. Bingler Markus Leippold ViT MedIm 24 6 0 03 May 2023
Exploring the Utility of Self-Supervised Pretraining Strategies for the Detection of Absent Lung Sliding in M-Mode Lung Ultrasound Blake Vanberlo Brian Li Alexander Wong Jesse Hoey R. Arntfield 13 4 0 05 Apr 2023
Structure Embedded Nucleus Classification for Histopathology Images Wei Lou Xiang Wan Guanbin Li X. Lou Chenghang Li Feng Gao Haofeng Li 16 9 0 22 Feb 2023
Diagnose Like a Pathologist: Transformer-Enabled Hierarchical Attention-Guided Multiple Instance Learning for Whole Slide Image Classification Conghao Xiong Hao Chen Joseph J. Y. Sung Irwin King MedIm 21 36 0 19 Jan 2023
Advances in Medical Image Analysis with Vision Transformers: A Comprehensive Review Reza Azad A. Kazerouni Moein Heidari Ehsan Khodapanah Aghdam Amir Molaei Yiwei Jia Abin Jose Rijo Roy Dorit Merhof MedIm ViT 30 161 0 09 Jan 2023
Weakly Supervised Joint Whole-Slide Segmentation and Classification in Prostate Cancer Pushpak Pati Guillaume Jaume Zeineb Ayadi Kevin Thandiackal Behzad Bozorgtabar M. Gabrani O. Goksel 14 17 0 07 Jan 2023
Multi-Scale Relational Graph Convolutional Network for Multiple Instance Learning in Histopathology Images Roozbeh Bazargani L. Fazli L. Goldenberg M. Gleave A. Bashashati Septimiu Salcudean MedIm 28 7 0 17 Dec 2022
Vision Transformers in Medical Imaging: A Review Emerald U. Henry Onyeka Emebob C. Omonhinmin ViT MedIm 22 34 0 18 Nov 2022
An Aggregation of Aggregation Methods in Computational Pathology M. Bilal R. Jewsbury Ruoyu Wang Hammam M. AlGhamdi Amina Asif Mark Eastwood Nasir M. Rajpoot 27 28 0 02 Nov 2022
A State-of-the-art Survey of Artificial Neural Networks for Whole-slide Image Analysis:from Popular Convolutional Neural Networks to Potential Visual Transformers Xintong Li Xirong Li Chen Li M. Rahaman Jian Wu Xiaoqi Li Yudong Yao M. Grzegorzek ViT MedIm 30 43 0 13 Apr 2021