BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model

8 April 2022

Hongyi Yuan

Papers citing "BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model"

50 / 62 papers shown

Title
Performance Evaluation of Large Language Models in Bangla Consumer Health Query Summarization Ajwad Abrar Farzana Tabassum Sabbir Ahmed LM&MA ELM AI4MH 43 0 0 08 May 2025
ConTextual: Improving Clinical Text Summarization in LLMs with Context-preserving Token Filtering and Knowledge Graphs Fahmida Liza Piya Rahmatollah Beheshti 131 0 0 23 Apr 2025
Protein Large Language Models: A Comprehensive Survey Yijia Xiao Wanjia Zhao Junkai Zhang Yiqiao Jin Han Zhang ... Xiao Luo Yu-Jie Zhang James Zou Yizhou Sun Wei Wang LM&MA AI4CE 61 3 0 21 Feb 2025
A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and Ethics Kai He Rui Mao Qika Lin Yucheng Ruan Xiang Lan Mengling Feng Erik Cambria LM&MA AILaw 93 154 0 28 Jan 2025
Parameter-Efficient Fine-Tuning for Foundation Models Dan Zhang Tao Feng Lilong Xue Yuandong Wang Yuxiao Dong J. Tang 46 8 0 23 Jan 2025
Self-Compositional Data Augmentation for Scientific Keyphrase Generation Mael Houbre Florian Boudin B. Daille Akiko Aizawa 37 0 0 05 Nov 2024
RoBIn: A Transformer-Based Model For Risk Of Bias Inference With Machine Reading Comprehension Abel Corrêa Dias Viviane Pereira Moreira João Luiz Dihl Comba 23 0 0 28 Oct 2024
Unified Representation of Genomic and Biomedical Concepts through Multi-Task, Multi-Source Contrastive Learning Hongyi Yuan Suqi Liu Kelly Cho Katherine P. Liao Alexandre Pereira T. Cai MedIm 24 0 0 14 Oct 2024
A Survey for Large Language Models in Biomedicine Chong Wang Mengyao Li Junjun He Zhongruo Wang Erfan Darzi ... Yi Yu Pietro Liò Tianyun Wang Yu Guang Wang Yiqing Shen LM&MA 34 9 0 29 Aug 2024
Overview of the BioLaySumm 2024 Shared Task on the Lay Summarization of Biomedical Research Articles Tomas Goldsack Carolina Scarton Matthew Shardlow Chenghua Lin 29 31 0 16 Aug 2024
HeCiX: Integrating Knowledge Graphs and Large Language Models for Biomedical Research Prerana Sanjay Kulkarni Muskaan Jain Disha Sheshanarayana Srinivasan Parthiban 42 0 0 19 Jul 2024
No perspective, no perception!! Perspective-aware Healthcare Answer Summarization Gauri Naik Sharad Chandakacherla S. Yadav Md. Shad Akhtar 24 6 0 13 Jun 2024
A Survey on Medical Large Language Models: Technology, Application, Trustworthiness, and Future Directions Lei Liu Xiaoyan Yang Junchi Lei Xiaoyang Liu Yue Shen ... Peng Wei Jinjie Gu Zhixuan Chu Zhan Qin Kui Ren LM&MA AILaw 46 14 0 06 Jun 2024
RadBARTsum: Domain Specific Adaption of Denoising Sequence-to-Sequence Models for Abstractive Radiology Report Summarization Jinge Wu Abul Hasan Honghan Wu 26 0 0 05 Jun 2024
DS@BioMed at ImageCLEFmedical Caption 2024: Enhanced Attention Mechanisms in Medical Caption Generation through Concept Detection Integration Nhi Ngoc-Yen Nguyen Le-Huy Tu Dieu-Phuong Nguyen Nhat-Tan Do Minh Triet Thai Bao-Thien Nguyen-Tat MedIm 34 1 0 01 Jun 2024
UIT-DarkCow team at ImageCLEFmedical Caption 2024: Diagnostic Captioning for Radiology Images Efficiency with Transformer Models Quan Van Nguyen Huy Quang Pham Dan Quang Tran Thang Kien-Bao Nguyen Nhat-Hao Nguyen-Dang Bao-Thien Nguyen-Tat MedIm 32 1 0 27 May 2024
Comparative Analysis of Open-Source Language Models in Summarizing Medical Text Data Yuhao Chen Zhimu Wang Bo Wen F. Zulkernine ELM LM&MA AI4MH 22 3 0 25 May 2024
MEDVOC: Vocabulary Adaptation for Fine-tuning Pre-trained Language Models on Medical Text Summarization Gunjan Balde Soumyadeep Roy Mainack Mondal Niloy Ganguly VLM 24 4 0 07 May 2024
A Comprehensive Survey on Evaluating Large Language Model Applications in the Medical Industry Yining Huang Keke Tang Meilian Chen Boyuan Wang ELM LM&MA 29 14 0 24 Apr 2024
Unveiling LLM Evaluation Focused on Metrics: Challenges and Solutions Taojun Hu Xiao-Hua Zhou ELM 41 12 0 14 Apr 2024
ClinLinker: Medical Entity Linking of Clinical Concept Mentions in Spanish Fernando Gallego Guillermo López-García Luis Gascó Sánchez Martin Krallinger Francisco-Javier Veredas 19 3 0 09 Apr 2024
Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey Qizhi Pei Lijun Wu Kaiyuan Gao Jinhua Zhu Yue Wang Zun Wang Tao Qin Rui Yan AI4CE 51 19 0 03 Mar 2024
How Important is Domain Specificity in Language Models and Instruction Finetuning for Biomedical Relation Extraction? Aviv Brokman Ramakanth Kavuluru LM&MA ALM 34 3 0 21 Feb 2024
BioMistral: A Collection of Open-Source Pretrained Large Language Models for Medical Domains Yanis Labrak Adrien Bazoge Emmanuel Morin P. Gourraud Mickael Rouvier Richard Dufour 105 191 0 15 Feb 2024
Progress and Opportunities of Foundation Models in Bioinformatics Qing Li Zhihang Hu Yixuan Wang Lei Li Yimin Fan Irwin King Le Song Yu-Hu Li AI4CE 40 9 0 06 Feb 2024
Collaborative Synthesis of Patient Records through Multi-Visit Health State Inference Hongda Sun Hongzhan Lin Rui Yan SyDa 27 2 0 22 Dec 2023
Improving Biomedical Entity Linking with Retrieval-enhanced Learning Zhenxi Lin Ziheng Zhang Xian Wu Yefeng Zheng 23 2 0 15 Dec 2023
Large language models in healthcare and medical domain: A review Zabir Al Nazi Wei Peng LM&MA 34 131 0 12 Dec 2023
HALO: An Ontology for Representing and Categorizing Hallucinations in Large Language Models Navapat Nananukul Mayank Kejriwal HILM 24 3 0 08 Dec 2023
Ascle: A Python Natural Language Processing Toolkit for Medical Text Generation Rui Yang Qingcheng Zeng Keen You Yujie Qiao Lucas Huang ... Dragomir R. Radev Zhiyong Lu Hua Xu Qingyu Chen Irene Z Li ELM LM&MA 23 3 0 28 Nov 2023
nach0: Multimodal Natural and Chemical Languages Foundation Model M. Livne Z. Miftahutdinov E. Tutubalina Maksim Kuznetsov Daniil Polykovskiy ... Aastha Jhunjhunwala Anthony Costa Alex Aliper Alán Aspuru-Guzik Alex Zhavoronkov AI4CE 27 12 0 21 Nov 2023
DocLens: Multi-aspect Fine-grained Evaluation for Medical Text Generation Yiqing Xie Sheng Zhang Hao Cheng Pengfei Liu Zelalem Gero Cliff Wong Tristan Naumann Hoifung Poon Carolyn Rose MedIm 16 4 0 16 Nov 2023
FaMeSumm: Investigating and Improving Faithfulness of Medical Summarization Nan Zhang Yusen Zhang Wu Guo P. Mitra Rui Zhang HILM 35 4 0 03 Nov 2023
Improving Biomedical Abstractive Summarisation with Knowledge Aggregation from Citation Papers Chen Tang Shunyu Wang Tomas Goldsack Chenghua Lin 24 17 0 24 Oct 2023
MedEval: A Multi-Level, Multi-Task, and Multi-Domain Medical Benchmark for Language Model Evaluation Zexue He Yu-Xiang Wang An Yan Yao Liu Eric Y. Chang Amilcare Gentili Julian McAuley Chun-Nan Hsu ELM 83 14 0 21 Oct 2023
Hierarchical Pretraining on Multimodal Electronic Health Records Xiaochen Wang Junyu Luo Jiaqi Wang Ziyi Yin Suhan Cui Yuan Zhong Yaqing Wang Fenglong Ma 39 5 0 11 Oct 2023
Multi-domain improves out-of-distribution and data-limited scenarios for medical image analysis Ece Ozkan Xavier Boix OOD 28 0 0 10 Oct 2023
A Comprehensive Evaluation of Large Language Models on Benchmark Biomedical Text Processing Tasks Fangshuo Liao Md Tahmid Rahman Laskar Cruz Barnum Jimmy X. Huang AI4MH LM&MA 30 68 0 06 Oct 2023
Overview of the BioLaySumm 2023 Shared Task on Lay Summarization of Biomedical Research Articles Tomas Goldsack Jiancheng Yang Qianqian Xie Carolina Scarton Matthew Shardlow Sophia Ananiadou Chenghua Lin 28 16 0 29 Sep 2023
Investigating Large Language Models and Control Mechanisms to Improve Text Readability of Biomedical Abstracts Z. Li Samuel Belkadi Nicolo Micheletti Lifeng Han Matthew Shardlow Goran Nenadic 28 5 0 22 Sep 2023
Automatic Personalized Impression Generation for PET Reports Using Large Language Models Xin Tie Muheon Shin Ali Pirasteh Nevein Ibrahim Zachary Huemann ... K. M. Kelly John W. Garrett Junjie Hu Steve Y. Cho Tyler Bradshaw LM&MA 25 10 0 18 Sep 2023
Biomedical Entity Linking with Triple-aware Pre-Training Xiongliang Yan Cedric Moller Ricardo Usbeck AI4CE 32 3 0 28 Aug 2023
SuryaKiran at MEDIQA-Sum 2023: Leveraging LoRA for Clinical Dialogue Summarization Kunal Suri Prakhar Mishra Saumajit Saha Ashutosh Kumar Singh LM&MA 29 2 0 11 Jul 2023
Enhancing Biomedical Text Summarization and Question-Answering: On the Utility of Domain-Specific Pre-Training Dima Galat Marian-Andrei Rizoiu 22 2 0 10 Jul 2023
Evaluation of ChatGPT on Biomedical Tasks: A Zero-Shot Comparison with Fine-Tuned Generative Transformers Israt Jahan Md Tahmid Rahman Laskar Chun Peng J. Huang LM&MA MedIm AI4MH 43 30 0 07 Jun 2023
RadLing: Towards Efficient Radiology Report Understanding Rikhiya Ghosh Sanjeev Kumar Karn Manuela Danu Larisa Micu Ramya Vunikili Oladimeji Farri MedIm 21 6 0 04 Jun 2023
Less Likely Brainstorming: Using Language Models to Generate Alternative Hypotheses Liyan Tang Yifan Peng Yanshan Wang Ying Ding Greg Durrett Justin F. Rousseau 32 9 0 30 May 2023
BiomedGPT: A Unified and Generalist Biomedical Generative Pre-trained Transformer for Vision, Language, and Multimodal Tasks Kai Zhang Jun Yu Eashan Adhikarla Rong-Er Zhou Zhilin Yan ... Xun Chen Yong Chen Quanzheng Li Hongfang Liu Lichao Sun LM&MA MedIm 31 157 0 26 May 2023
BioAug: Conditional Generation based Data Augmentation for Low-Resource Biomedical NER Sreyan Ghosh Utkarsh Tyagi Sonal Kumar Dinesh Manocha MedIm 28 10 0 18 May 2023
A Survey for Biomedical Text Summarization: From Pre-trained to Large Language Models Qianqian Xie Zheheng Luo Benyou Wang Sophia Ananiadou LM&MA VLM 28 8 0 18 Apr 2023