Title
FPGA-Based Near-Memory Acceleration of Modern Data-Intensive Applications Gagandeep Singh M. Alser Damla Senol Cali D. Diamantopoulos Juan Gómez Luna Henk Corporaal O. Mutlu 51 76 0 11 Jun 2021
Reducing Solid-State Drive Read Latency by Optimizing Read-Retry (Extended Abstract) Jisung Park Myungsuk Kim Myoungjun Chun Lois Orosa Jihong Kim O. Mutlu 37 45 0 22 Dec 2020
Nanopore Base Calling on the Edge Peter Perešíni V. Boža Broňa Brejová T. Vinař 102 40 0 09 Nov 2020
Accelerating Genome Analysis: A Primer on an Ongoing Journey M. Alser Z. Bingöl Damla Senol Cali Jeremie S. Kim Saugata Ghose C. Alkan O. Mutlu 68 83 0 30 Jul 2020
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SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs M. Alser Taha Shahroodi Juan Gómez Luna C. Alkan O. Mutlu 51 67 0 20 Oct 2019
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm Can Firtina Jeremie S. Kim M. Alser Damla Senol Cali A. E. Cicek C. Alkan O. Mutlu 37 49 0 12 Feb 2019
ASAP: Accelerated Short-Read Alignment on Programmable Hardware Subho Sankar Banerjee Mohamed El-Hadedy Jong Bin Lim Zbigniew T. Kalbarczyk Deming Chen S. Lumetta Ravishankar Iyer 33 56 0 06 Mar 2018