PWM2Vec: An Efficient Embedding Approach for Viral Host Specification from Coronavirus Spike Sequences

6 January 2022

Sarwan Ali

Papers citing "PWM2Vec: An Efficient Embedding Approach for Viral Host Specification from Coronavirus Spike Sequences"

21 / 21 papers shown

Title
MIK: Modified Isolation Kernel for Biological Sequence Visualization, Classification, and Clustering Sarwan Ali Prakash Chourasia Haris Mansoor Bipin Koirala Murray Patterson 159 0 0 21 Oct 2024
Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification Tasks Sarwan Ali Taslim Murad Prakash Chourasia Haris Mansoor I. Khan Pin-Yu Chen Murray Patterson 31 1 0 16 Oct 2024
DANCE: Deep Learning-Assisted Analysis of Protein Sequences Using Chaos Enhanced Kaleidoscopic Images Taslim Murad Prakash Chourasia Sarwan Ali Murray Patterson 31 3 0 10 Sep 2024
Nearest Neighbor CCP-Based Molecular Sequence Analysis Sarwan Ali Prakash Chourasia Bipin Koirala Murray Patterson 42 1 0 07 Sep 2024
A Universal Non-Parametric Approach For Improved Molecular Sequence Analysis Sarwan Ali Tamkanat E. Ali Prakash Chourasia Murray Patterson 20 1 0 12 Feb 2024
Beyond Accuracy: Measuring Representation Capacity of Embeddings to Preserve Structural and Contextual Information Sarwan Ali 37 0 0 20 Sep 2023
Sequence-Based Nanobody-Antigen Binding Prediction Usama Sardar Sarwan Ali Muhammad Sohaib Ayub Muhammad Shoaib Khurram Bashir Imdadullah Khan Murray Patterson 33 3 0 15 Jul 2023
T Cell Receptor Protein Sequences and Sparse Coding: A Novel Approach to Cancer Classification Z. Tayebi Sarwan Ali Prakash Chourasia Taslim Murad Murray Patterson MedIm 16 0 0 25 Apr 2023
Virus2Vec: Viral Sequence Classification Using Machine Learning Sarwan Ali B. Bello Prakash Chourasia Ria Thazhe Punathil Pin-Yu Chen Imdadullah Khan Murray Patterson 37 2 0 24 Apr 2023
ViralVectors: Compact and Scalable Alignment-free Virome Feature Generation Sarwan Ali Prakash Chourasia Z. Tayebi B. Bello Murray Patterson 32 6 0 06 Apr 2023
BioSequence2Vec: Efficient Embedding Generation For Biological Sequences Sarwan Ali Usama Sardar Murray Patterson Imdadullah Khan 29 1 0 01 Apr 2023
Exploring The Potential Of GANs In Biological Sequence Analysis Taslim Murad Sarwan Ali Murray Patterson 31 9 0 04 Mar 2023
Seq-HyGAN: Sequence Classification via Hypergraph Attention Network Khaled Mohammed Saifuddin Corey May Farhan Tanvir Muhammad Ifte Khairul Islam Esra Akbas GNN 24 9 0 04 Mar 2023
Efficient Classification of SARS-CoV-2 Spike Sequences Using Federated Learning Prakash Chourasia Taslim Murad Z. Tayebi Sarwan Ali Imdadullah Khan Murray Patterson FedML 37 5 0 17 Feb 2023
Evaluating COVID-19 Sequence Data Using Nearest-Neighbors Based Network Model Sarwan Ali 24 5 0 19 Nov 2022
Informative Initialization and Kernel Selection Improves t-SNE for Biological Sequences Prakash Chourasia Sarwan Ali Murray Patterson 29 14 0 16 Nov 2022
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data Prakash Chourasia Sarwan Ali Simone Ciccolella G. D. Vedova Murray Patterson 26 9 0 15 Nov 2022
Efficient Approximate Kernel Based Spike Sequence Classification Sarwan Ali Bikram Sahoo Muhammad Asad Khan A. Zelikovsky Imdadullah Khan Murray Patterson AI4TS 33 22 0 11 Sep 2022
Benchmarking Machine Learning Robustness in Covid-19 Genome Sequence Classification Sarwan Ali Bikram Sahoo Alexander Zelikovskiy Pin-Yu Chen Murray Patterson OOD AAML 32 19 0 18 Jul 2022
A k-mer Based Approach for SARS-CoV-2 Variant Identification Sarwan Ali Bikram Sahoo N. Ullah Alexander Zelikovskiy M. Patterson Imdadullah Khan 67 39 0 07 Aug 2021
Detecting DDoS Attack on SDN Due to Vulnerabilities in OpenFlow Sarwan Ali Maria K. Alvi S. Faizullah Muhammad Asad Khan Abdullah Alshanqiti Imdadullah Khan 31 35 0 27 Dec 2019