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Prediction of Adverse Biological Effects of Chemicals Using Knowledge Graph Embeddings

8 December 2021

Papers citing "Prediction of Adverse Biological Effects of Chemicals Using Knowledge Graph Embeddings"

22 / 22 papers shown

Title
Neural sentence embedding models for semantic similarity estimation in the biomedical domain Kathrin Blagec Hong Xu Asan Agibetov Matthias Samwald 50 22 0 01 Oct 2021
OWL2Vec*: Embedding of OWL Ontologies Jiaoyan Chen Pan Hu Ernesto Jiménez-Ruiz Ole Magnus Holter Denvar Antonyrajah Ian Horrocks 3DV 55 141 0 30 Sep 2020
Bringing Light Into the Dark: A Large-scale Evaluation of Knowledge Graph Embedding Models Under a Unified Framework Mehdi Ali M. Berrendorf Charles Tapley Hoyt Laurent Vermue Mikhail Galkin Sahand Sharifzadeh Asja Fischer Volker Tresp Jens Lehmann 90 125 0 23 Jun 2020
Benchmarking neural embeddings for link prediction in knowledge graphs under semantic and structural changes Asan Agibetov Matthias Samwald 54 8 0 15 May 2020
Knowledge Graph Embedding for Link Prediction: A Comparative Analysis Andrea Rossi D. Firmani Antonio Matinata P. Merialdo Denilson Barbosa 82 349 0 03 Feb 2020
OpenBioLink: A benchmarking framework for large-scale biomedical link prediction Anna Breit Simon Ott Asan Agibetov Matthias Samwald LM&MA 92 55 0 10 Dec 2019
Learning Hierarchy-Aware Knowledge Graph Embeddings for Link Prediction Zhanqiu Zhang Jianyu Cai Yongdong Zhang Jie Wang 100 392 0 21 Nov 2019
Knowledge Graph Embedding for Ecotoxicological Effect Prediction E. B. Myklebust Ernesto Jiménez-Ruiz Jiaoyan Chen Raoul Wolf K. Tollefsen 79 22 0 02 Jul 2019
EL Embeddings: Geometric construction of models for the Description Logic EL ++ Maxat Kulmanov Wang Liu-Wei Yuan Yan Robert Hoehndorf 64 108 0 27 Feb 2019
RotatE: Knowledge Graph Embedding by Relational Rotation in Complex Space Zhiqing Sun Zhihong Deng Jian-Yun Nie Jian Tang 108 2,147 0 26 Feb 2019
Global and local evaluation of link prediction tasks with neural embeddings Asan Agibetov Matthias Samwald 62 10 0 27 Jul 2018
Semantic Explanations of Predictions Freddy Lecue Jiewen Wu FAtt 26 11 0 27 May 2018
OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction F. Z. Smaili Xin Gao Robert Hoehndorf 54 143 0 29 Apr 2018
A Novel Embedding Model for Knowledge Base Completion Based on Convolutional Neural Network Dai Quoc Nguyen T. Nguyen Dat Quoc Nguyen Dinh Q. Phung 3DV 83 706 0 06 Dec 2017
Convolutional 2D Knowledge Graph Embeddings Tim Dettmers Pasquale Minervini Pontus Stenetorp Sebastian Riedel GNN 3DV 197 2,637 0 05 Jul 2017
Knowledge Base Completion: Baselines Strike Back Rudolf Kadlec Ondrej Bajgar Jan Kleindienst 71 190 0 30 May 2017
On the Equivalence of Holographic and Complex Embeddings for Link Prediction Katsuhiko Hayashi Masashi Shimbo 86 82 0 18 Feb 2017
Neuro-symbolic representation learning on biological knowledge graphs Mona Alshahrani Mohammed Asif Khan Omar Maddouri A. Kinjo N. Queralt-Rosinach Robert Hoehndorf NAI 60 140 0 13 Dec 2016
Complex Embeddings for Simple Link Prediction Théo Trouillon Johannes Welbl Sebastian Riedel Éric Gaussier Guillaume Bouchard BDL 109 2,991 0 20 Jun 2016
Holographic Embeddings of Knowledge Graphs Maximilian Nickel Lorenzo Rosasco T. Poggio 73 1,202 0 16 Oct 2015
Adam: A Method for Stochastic Optimization Diederik P. Kingma Jimmy Ba ODL 2.1K 150,433 0 22 Dec 2014
Embedding Entities and Relations for Learning and Inference in Knowledge Bases Bishan Yang Wen-tau Yih Xiaodong He Jianfeng Gao Li Deng NAI 116 3,209 0 20 Dec 2014