CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks

10 November 2021

Papers citing "CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks"

27 / 27 papers shown

Title
Temporal Entailment Pretraining for Clinical Language Models over EHR Data Tatsunori Tanaka Fi Zheng Kai Sato Zhifeng Li Yuanyun Zhang Shi Li 29 0 0 25 Apr 2025
MedRep: Medical Concept Representation for General Electronic Health Record Foundation Models Junmo Kim Namkyeong Lee Jiwon Kim Kwangsoo Kim 34 0 0 11 Apr 2025
ChronoFormer: Time-Aware Transformer Architectures for Structured Clinical Event Modeling Yuanyun Zhang Shi Li 39 0 0 10 Apr 2025
Large Language Models are Powerful Electronic Health Record Encoders S. Hegselmann Georg von Arnim Tillmann Rheude Noel Kronenberg David Sontag Gerhard Hindricks R. Eils Benjamin Wild LM&MA 49 1 0 24 Feb 2025
RGAR: Recurrence Generation-augmented Retrieval for Factual-aware Medical Question Answering Sichu Liang Linhai Zhang Hongyu Zhu Wenwen Wang Yulan He Deyu Zhou RALM 48 0 0 19 Feb 2025
Context Clues: Evaluating Long Context Models for Clinical Prediction Tasks on EHRs Michael Wornow Suhana Bedi Miguel Angel Fuentes Hernandez E. Steinberg Jason Alan Fries Christopher Ré Sanmi Koyejo N. Shah 95 4 0 09 Dec 2024
Generalized Prompt Tuning: Adapting Frozen Univariate Time Series Foundation Models for Multivariate Healthcare Time Series Mingzhu Liu Angela H. Chen George H. Chen AI4TS 74 0 0 19 Nov 2024
When Raw Data Prevails: Are Large Language Model Embeddings Effective in Numerical Data Representation for Medical Machine Learning Applications? Yanjun Gao Skatje Myers Shan Chen Dmitriy Dligach Timothy A Miller Danielle S. Bitterman M. Churpek Majid Afshar 49 7 0 15 Aug 2024
Inverse Probability of Treatment Weighting with Deep Sequence Models Enables Accurate treatment effect Estimation from Electronic Health Records Junghwan Lee Simin Ma N. Serban Shihao Yang CML 21 0 0 13 Jun 2024
From Basic to Extra Features: Hypergraph Transformer Pretrain-then-Finetuning for Balanced Clinical Predictions on EHR Ran Xu Yiwen Lu Chang Liu Yong Chen Yan Sun Xiao Hu Joyce C. Ho Carl Yang 46 1 0 09 Jun 2024
Enhancing Antibiotic Stewardship using a Natural Language Approach for Better Feature Representation Simon A. Lee Trevor Brokowski Jeffrey N. Chiang 29 8 0 30 May 2024
EHRMamba: Towards Generalizable and Scalable Foundation Models for Electronic Health Records Adibvafa Fallahpour Mahshid Alinoori Arash Afkanpour Amrit Krishnan Mamba 19 2 0 23 May 2024
Data augmentation method for modeling health records with applications to clopidogrel treatment failure detection Sunwoong Choi Samuel Kim 21 2 0 28 Feb 2024
CEHR-GPT: Generating Electronic Health Records with Chronological Patient Timelines Chao Pang Xinzhuo Jiang Nishanth P Pavinkurve Krishna S. Kalluri Elise Minto ... Linying Zhang G. Hripcsak Gamze Gürsoy Noémie Elhadad Karthik Natarajan 28 8 0 06 Feb 2024
Inadequacy of common stochastic neural networks for reliable clinical decision support Adrian Lindenmeyer Malte Blattmann S. Franke Thomas Neumuth Daniel Schneider BDL 35 1 0 24 Jan 2024
Clinical Risk Prediction Using Language Models: Benefits And Considerations Angeela Acharya Sulabh Shrestha Anyi Chen Joseph Conte Sanja Avramovic S. Sikdar Antonios Anastasopoulos Sanmay Das 26 6 0 29 Nov 2023
Consensus of state of the art mortality prediction models: From all-cause mortality to sudden death prediction Yola Jones F. Deligianni Jeffrey Stephen Dalton P. Pellicori John G. F. Cleland OOD 26 0 0 30 Aug 2023
Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events Matthew B. A. McDermott Bret A. Nestor Peniel Argaw I. Kohane AI4TS 29 21 0 20 Jun 2023
The Shaky Foundations of Clinical Foundation Models: A Survey of Large Language Models and Foundation Models for EMRs Michael Wornow Yizhe Xu Rahul Thapa Birju S. Patel E. Steinberg Scott L. Fleming M. Pfeffer Jason Alan Fries N. Shah LM&MA 28 32 0 22 Mar 2023
ExBEHRT: Extended Transformer for Electronic Health Records to Predict Disease Subtypes & Progressions M. Rupp Oriane Peter T. Pattipaka 22 9 0 22 Mar 2023
MOTOR: A Time-To-Event Foundation Model For Structured Medical Records E. Steinberg Jason Alan Fries Yizhe Xu N. Shah OOD AI4TS 36 13 0 09 Jan 2023
Semantic Decomposition Improves Learning of Large Language Models on EHR Data David A. Bloore R. Gauriau Anna Decker Jacob Oppenheim 26 1 0 14 Nov 2022
Dynamic Survival Transformers for Causal Inference with Electronic Health Records P. Chatha Yixin Wang Zhenke Wu Jeffrey Regier CML 28 1 0 25 Oct 2022
Unsupervised pre-training of graph transformers on patient population graphs Chantal Pellegrini Nassir Navab Anees Kazi MedIm AI4CE 46 11 0 21 Jul 2022
Hi-BEHRT: Hierarchical Transformer-based model for accurate prediction of clinical events using multimodal longitudinal electronic health records Yikuan Li M. Mamouei G. Salimi-Khorshidi Shishir Rao A. Hassaine D. Canoy Thomas Lukasiewicz K. Rahimi 21 76 0 21 Jun 2021
Temporal Self-Attention Network for Medical Concept Embedding Xueping Peng Guodong Long Tao Shen Sen Wang Jing Jiang Michael Blumenstein 70 29 0 15 Sep 2019
Recurrent Neural Networks for Multivariate Time Series with Missing Values Zhengping Che S. Purushotham Kyunghyun Cho David Sontag Yan Liu AI4TS 243 1,900 0 06 Jun 2016