Can Language Models be Biomedical Knowledge Bases?

15 September 2021

Papers citing "Can Language Models be Biomedical Knowledge Bases?"

50 / 70 papers shown

Title
SelfPrompt: Autonomously Evaluating LLM Robustness via Domain-Constrained Knowledge Guidelines and Refined Adversarial Prompts Aihua Pei Zehua Yang Shunan Zhu Ruoxi Cheng Ju Jia AAML 77 2 0 01 Dec 2024
What can LLM tell us about cities? Zhuoheng Li Yaochen Wang Zhixue Song Yuqi Huang Rui Bao Guanjie Zheng Z. Li 67 3 0 25 Nov 2024
ChroKnowledge: Unveiling Chronological Knowledge of Language Models in Multiple Domains Yein Park Chanwoong Yoon Jungwoo Park Donghyeon Lee Minbyul Jeong Jaewoo Kang KELM 61 1 0 13 Oct 2024
Adaptive Question Answering: Enhancing Language Model Proficiency for Addressing Knowledge Conflicts with Source Citations Sagi Shaier Ari Kobren Philip Ogren HILM 29 6 0 05 Oct 2024
Past Meets Present: Creating Historical Analogy with Large Language Models Nianqi Li Siyu Yuan Jiangjie Chen Jiaqing Liang Feng Wei Zujie Liang Deqing Yang Yanghua Xiao 35 0 0 23 Sep 2024
Reliable and diverse evaluation of LLM medical knowledge mastery Yuxuan Zhou Xien Liu Chen Ning Xiao Zhang Ji Wu MedIm 34 0 0 22 Sep 2024
Generalized knowledge-enhanced framework for biomedical entity and relation extraction Minh Nguyen Phuong Le 26 1 0 13 Aug 2024
Knowledge Mechanisms in Large Language Models: A Survey and Perspective Meng Wang Yunzhi Yao Ziwen Xu Shuofei Qiao Shumin Deng ... Yong-jia Jiang Pengjun Xie Fei Huang Huajun Chen Ningyu Zhang 52 28 0 22 Jul 2024
A Survey on Symbolic Knowledge Distillation of Large Language Models Kamal Acharya Alvaro Velasquez H. Song SyDa 41 5 0 12 Jul 2024
KGPA: Robustness Evaluation for Large Language Models via Cross-Domain Knowledge Graphs Aihua Pei Zehua Yang Shunan Zhu Ruoxi Cheng Ju Jia Lina Wang 42 1 0 16 Jun 2024
Improving Concept Alignment in Vision-Language Concept Bottleneck Models Nithish Muthuchamy Selvaraj Xiaobao Guo Bingquan Shen A. Kong Alex C. Kot VLM 46 0 0 03 May 2024
Dissecting Paraphrases: The Impact of Prompt Syntax and supplementary Information on Knowledge Retrieval from Pretrained Language Models Stephan Linzbach Dimitar Dimitrov Laura Kallmeyer Kilian Evang Hajira Jabeen Stefan Dietze KELM 33 0 0 02 Apr 2024
JMLR: Joint Medical LLM and Retrieval Training for Enhancing Reasoning and Professional Question Answering Capability Junda Wang Zhichao Yang Zonghai Yao Hong-ye Yu BDL AI4MH LRM 40 30 0 27 Feb 2024
Can Language Models Act as Knowledge Bases at Scale? Qiyuan He Yizhong Wang Wenya Wang KELM LRM 29 8 0 22 Feb 2024
SYNFAC-EDIT: Synthetic Imitation Edit Feedback for Factual Alignment in Clinical Summarization Prakamya Mishra Zonghai Yao Parth Vashisht Feiyun Ouyang Beining Wang Vidhi Mody Hong-ye Yu SyDa MedIm 44 4 0 21 Feb 2024
The Queen of England is not England's Queen: On the Lack of Factual Coherency in PLMs Paul Youssef Jorg Schlotterer Christin Seifert KELM 26 2 0 02 Feb 2024
Comparing Template-based and Template-free Language Model Probing Sagi Shaier Kevin Bennett Lawrence E Hunter K. Wense ELM 28 3 0 31 Jan 2024
Desiderata for the Context Use of Question Answering Systems Sagi Shaier Lawrence E Hunter K. Wense 28 4 0 31 Jan 2024
In-context Learning with Retrieved Demonstrations for Language Models: A Survey an Luo Xin Xu Yue Liu Panupong Pasupat Mehran Kazemi RALM 31 55 0 21 Jan 2024
README: Bridging Medical Jargon and Lay Understanding for Patient Education through Data-Centric NLP Zonghai Yao Nandyala Siddharth Kantu Guanghao Wei Hieu Tran Zhangqi Duan Sunjae Kwon Zhichao Yang Readme annotation team Hong-ye Yu 26 7 0 24 Dec 2023
PaperQA: Retrieval-Augmented Generative Agent for Scientific Research Jakub Lála Odhran O'Donoghue Aleksandar Shtedritski Sam Cox Samuel G. Rodriques Andrew D. White RALM 77 73 0 08 Dec 2023
Do Physicians Know How to Prompt? The Need for Automatic Prompt Optimization Help in Clinical Note Generation Zonghai Yao Ahmed Jaafar Beining Wang Zhichao Yang Hong-ye Yu LM&MA 27 2 0 16 Nov 2023
Knowledge-Augmented Large Language Models for Personalized Contextual Query Suggestion Jinheon Baek N. Chandrasekaran Silviu Cucerzan Allen Herring S. Jauhar RALM KELM 26 38 0 10 Nov 2023
Multimodal Machine Learning in Image-Based and Clinical Biomedicine: Survey and Prospects Elisa Warner Joonsan Lee William Hsu T. Syeda-Mahmood Charles Kahn Olivier Gevaert Arvind Rao LM&MA 19 6 0 04 Nov 2023
Synthetic Imitation Edit Feedback for Factual Alignment in Clinical Summarization Prakamya Mishra Zonghai Yao Shuwei Chen Beining Wang Rohan Mittal Hong-ye Yu KELM ALM HILM 28 7 0 30 Oct 2023
EHRTutor: Enhancing Patient Understanding of Discharge Instructions Zihao Zhang Zonghai Yao Huixue Zhou Feiyun Ouyang Hong-ye Yu LM&MA AI4Ed 38 4 0 30 Oct 2023
Give Me the Facts! A Survey on Factual Knowledge Probing in Pre-trained Language Models Paul Youssef Osman Alperen Koracs Meijie Li Jorg Schlotterer Christin Seifert KELM 24 16 0 25 Oct 2023
EpiK-Eval: Evaluation for Language Models as Epistemic Models Gabriele Prato Jerry Huang Prasannna Parthasarathi Shagun Sodhani Sarath Chandar ELM 32 4 0 23 Oct 2023
Systematic Assessment of Factual Knowledge in Large Language Models Linhao Luo Thuy-Trang Vu Dinh Q. Phung Gholamreza Haffari KELM 18 9 0 18 Oct 2023
BioPlanner: Automatic Evaluation of LLMs on Protocol Planning in Biology Odhran O'Donoghue Aleksandar Shtedritski John Ginger Ralph Abboud Ali E. Ghareeb Justin Booth Samuel G. Rodriques 22 17 0 16 Oct 2023
Who Are All The Stochastic Parrots Imitating? They Should Tell Us! Sagi Shaier Lawrence E Hunter K. Wense 36 3 0 16 Oct 2023
KGQuiz: Evaluating the Generalization of Encoded Knowledge in Large Language Models Yuyang Bai Shangbin Feng Vidhisha Balachandran Zhaoxuan Tan Shiqi Lou Tianxing He Yulia Tsvetkov ELM 40 2 0 15 Oct 2023
GeoLLM: Extracting Geospatial Knowledge from Large Language Models Rohin Manvi Samar Khanna Gengchen Mai Marshall Burke David B. Lobell Stefano Ermon 26 43 0 10 Oct 2023
Improving Summarization with Human Edits Zonghai Yao Benjamin J Schloss Sai P. Selvaraj 24 3 0 09 Oct 2023
On the Evolution of Knowledge Graphs: A Survey and Perspective Xuhui Jiang Chengjin Xu Yinghan Shen Xun Sun Lumingyuan Tang Sai Wang Zhongwu Chen Yuanzhuo Wang Jian Guo 27 8 0 07 Oct 2023
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities Jiaoyan Chen Hang Dong Janna Hastings Ernesto Jiménez-Ruiz Vanessa Lopez Pierre Monnin Catia Pesquita Petr vSkoda Valentina A. M. Tamma 21 11 0 29 Sep 2023
TaskLAMA: Probing the Complex Task Understanding of Language Models Quan Yuan Mehran Kazemi Xinyuan Xu Isaac Noble Vaiva Imbrasaite Deepak Ramachandran LRM 28 10 0 29 Aug 2023
CMB: A Comprehensive Medical Benchmark in Chinese Xidong Wang Guiming Hardy Chen Dingjie Song Zhiyi Zhang Zhihong Chen ... Feng Jiang Jianquan Li Xiang Wan Benyou Wang Haizhou Li LM&MA ELM AI4MH 30 79 0 17 Aug 2023
PaniniQA: Enhancing Patient Education Through Interactive Question Answering Pengshan Cai Zonghai Yao Fei Liu Dakuo Wang Meghan Reilly ... Yi Cao Alok Kapoor Adarsha S. Bajracharya D. Berlowitz Hongfeng Yu 38 18 0 07 Aug 2023
CARE-MI: Chinese Benchmark for Misinformation Evaluation in Maternity and Infant Care Tong Xiang Liangzhi Li Wangyue Li Min‐Jun Bai Lu Wei Bowen Wang Noa Garcia 36 5 0 04 Jul 2023
UMASS_BioNLP at MEDIQA-Chat 2023: Can LLMs generate high-quality synthetic note-oriented doctor-patient conversations? Junda Wang Zonghai Yao Avijit Mitra Samuel Osebe Zhichao Yang Hongfeng Yu LM&MA MedIm 29 13 0 29 Jun 2023
Give Us the Facts: Enhancing Large Language Models with Knowledge Graphs for Fact-aware Language Modeling Lin F. Yang Hongyang Chen Zhao Li Xiao Ding Xindong Wu KELM 29 87 0 20 Jun 2023
Unifying Large Language Models and Knowledge Graphs: A Roadmap Shirui Pan Linhao Luo Yufei Wang Chen Chen Jiapu Wang Xindong Wu KELM 35 715 0 14 Jun 2023
Large Language Models, scientific knowledge and factuality: A systematic analysis in antibiotic discovery Magdalena Wysocka Oskar Wysocki Maxime Delmas V. Mutel André Freitas LM&MA 35 6 0 28 May 2023
Injecting Knowledge into Biomedical Pre-trained Models via Polymorphism and Synonymous Substitution Hongbo Zhang Xiang Wan Benyou Wang KELM 17 1 0 24 May 2023
Summarizing, Simplifying, and Synthesizing Medical Evidence Using GPT-3 (with Varying Success) Chantal Shaib Millicent Li Sebastian Antony Joseph Iain J. Marshall Junyi Jessy Li Byron C. Wallace LM&MA ELM 20 63 0 10 May 2023
Prompt Engineering for Healthcare: Methodologies and Applications Jiaqi Wang Enze Shi Sigang Yu Zihao Wu Chong Ma ... Dajiang Zhu Yixuan Yuan Dinggang Shen Tianming Liu Shu Zhang LM&MA 44 111 0 28 Apr 2023
The Life Cycle of Knowledge in Big Language Models: A Survey Boxi Cao Hongyu Lin Xianpei Han Le Sun KELM 33 27 0 14 Mar 2023
Dynamic Benchmarking of Masked Language Models on Temporal Concept Drift with Multiple Views Katerina Margatina Shuai Wang Yogarshi Vyas Neha Ann John Yassine Benajiba Miguel Ballesteros 17 15 0 23 Feb 2023
Language Model Analysis for Ontology Subsumption Inference Yuan He Jiaoyan Chen Ernesto Jiménez-Ruiz Hang Dong Ian Horrocks 17 21 0 14 Feb 2023