Do Transformers Really Perform Bad for Graph Representation?

9 June 2021

Tianle Cai

Papers citing "Do Transformers Really Perform Bad for Graph Representation?"

50 / 247 papers shown

Title
Graph Alignment for Benchmarking Graph Neural Networks and Learning Positional Encodings Adrien Lagesse Marc Lelarge 12 0 0 19 May 2025
Wide & Deep Learning for Node Classification Yancheng Chen Wenguo Yang Zhipeng Jiang GNN 38 0 0 04 May 2025
Scalability Matters: Overcoming Challenges in InstructGLM with Similarity-Degree-Based Sampling Hyun Lee Chris Yi Maminur Islam B.D.S. Aritra 35 0 0 02 May 2025
GraphRAFT: Retrieval Augmented Fine-Tuning for Knowledge Graphs on Graph Databases Alfred Clemedtson Borun Shi RALM 68 0 0 07 Apr 2025
CL-MFAP: A Contrastive Learning-Based Multimodal Foundation Model for Molecular Property Prediction and Antibiotic Screening Gen Zhou Sugitha Janarthanan Yutong Lu Pingzhao Hu 47 0 0 16 Feb 2025
ChemDFM-X: Towards Large Multimodal Model for Chemistry Zihan Zhao B. Chen Jingpiao Li Lu Chen Liyang Wen ... Ziping Wan Yansi Li Zhongyang Dai Xin Chen Kai Yu AI4CE 55 3 0 03 Jan 2025
Graph Triple Attention Network: A Decoupled Perspective Xiaotang Wang Yun Zhu Haizhou Shi Yongchao Liu Chuntao Hong 70 2 0 03 Jan 2025
Graph Transformer Networks for Accurate Band Structure Prediction: An End-to-End Approach Weiyi Gong Tao Sun Hexin Bai Jeng-Yuan Tsai Haibin Ling Q. Yan 82 0 0 25 Nov 2024
Even Sparser Graph Transformers Hamed Shirzad Honghao Lin B. Venkatachalam A. Velingker David P. Woodruff Danica J. Sutherland GNN 101 3 0 25 Nov 2024
A Theory for Compressibility of Graph Transformers for Transductive Learning Hamed Shirzad Honghao Lin A. Velingker B. Venkatachalam David P. Woodruff Danica J. Sutherland 83 1 0 20 Nov 2024
Towards Dynamic Message Passing on Graphs Junshu Sun Chenxue Yang Xiangyang Ji Qingming Huang Shuhui Wang 40 0 0 31 Oct 2024
Scalable Message Passing Neural Networks: No Need for Attention in Large Graph Representation Learning Haitz Sáez de Ocáriz Borde Artem Lukoianov Anastasis Kratsios Michael M. Bronstein Xiaowen Dong GNN 43 1 0 29 Oct 2024
KnowGraph: Knowledge-Enabled Anomaly Detection via Logical Reasoning on Graph Data Andy Zhou Xiaojun Xu Ramesh Raghunathan Alok Lal Xinze Guan Bin Yu Bo Li 35 1 0 10 Oct 2024
Supra-Laplacian Encoding for Transformer on Dynamic Graphs Yannis Karmim Marc Lafon Raphael Fournier SÑiehotta Nicolas Thome 33 1 0 26 Sep 2024
Fast-and-Frugal Text-Graph Transformers are Effective Link Predictors Andrei Catalin Coman Christos Theodoropoulos Marie-Francine Moens James Henderson 46 0 0 13 Aug 2024
Non-convolutional Graph Neural Networks Yuanqing Wang N. Scherer-Negenborn GNN 35 3 0 31 Jul 2024
Scalable Graph Compressed Convolutions Junshu Sun Chen Yang Shuhui Wang Qingming Huang GNN 48 0 0 26 Jul 2024
Molecular Topological Profile (MOLTOP) -- Simple and Strong Baseline for Molecular Graph Classification Jakub Adamczyk Wojciech Czech 42 2 0 16 Jul 2024
Relaxing Graph Transformers for Adversarial Attacks Philipp Foth Lukas Gosch Simon Geisler Leo Schwinn Stephan Günnemann AAML 52 1 0 16 Jul 2024
When Heterophily Meets Heterogeneity: New Graph Benchmarks and Effective Methods Junhong Lin Xiaojie Guo Shuaicheng Zhang Dawei Zhou Yada Zhu Julian Shun 40 1 0 15 Jul 2024
Graph in Graph Neural Network Jiongshu Wang Jing Yang Jiankang Deng Hatice Gunes Siyang Song GNN 29 1 0 30 Jun 2024
MM-GTUNets: Unified Multi-Modal Graph Deep Learning for Brain Disorders Prediction Luhui Cai Weiming Zeng Hongyu Chen Hua Zhang Yueyang Li Hongjie Yan Lingbin Bian Lingbin Bian Wai Ting Siok Nizhuan Wang MedIm 55 3 0 20 Jun 2024
Generative Inverse Design of Crystal Structures via Diffusion Models with Transformers Izumi Takahara Kiyou Shibata Teruyasu Mizoguchi DiffM AI4CE 39 2 0 13 Jun 2024
Expressivity and Generalization: Fragment-Biases for Molecular GNNs Tom Wollschlager Niklas Kemper Leon Hetzel Johanna Sommer Stephan Günnemann 50 4 0 12 Jun 2024
The Intelligible and Effective Graph Neural Additive Networks Maya Bechler-Speicher Amir Globerson Ran Gilad-Bachrach 42 5 0 03 Jun 2024
Anomaly Detection in Dynamic Graphs: A Comprehensive Survey Ocheme Anthony Ekle William Eberle AI4TS 42 10 0 31 May 2024
A Structure-Aware Lane Graph Transformer Model for Vehicle Trajectory Prediction Zhanbo Sun Caiyin Dong Ang Ji Ruibin Zhao Yu Zhao 58 0 0 30 May 2024
Reference Neural Operators: Learning the Smooth Dependence of Solutions of PDEs on Geometric Deformations Ze Cheng Zhongkai Hao Xiaoqiang Wang Jianing Huang Youjia Wu Xudan Liu Yiru Zhao Songming Liu Hang Su AI4CE 40 2 0 27 May 2024
LoGAH: Predicting 774-Million-Parameter Transformers using Graph HyperNetworks with 1/100 Parameters Xinyu Zhou Boris Knyazev Alexia Jolicoeur-Martineau Jie Fu AI4CE 45 0 0 25 May 2024
Attending to Topological Spaces: The Cellular Transformer Rubén Ballester Pablo Hernández-García Mathilde Papillon Claudio Battiloro Nina Miolane Tolga Birdal Carles Casacuberta Sergio Escalera Mustafa Hajij 43 3 0 23 May 2024
AnchorGT: Efficient and Flexible Attention Architecture for Scalable Graph Transformers Wenhao Zhu Guojie Song Liangji Wang Shaoguo Liu 42 0 0 06 May 2024
$$\texttt{MiniMol}$: A Parameter-Efficient Foundation Model for Molecular Learning$ $\texttt{MiniMol}$ : A Parameter-Efficient Foundation Model for Molecular Learning Kerstin Klaser Bla.zej Banaszewski S. Maddrell-Mander Callum McLean Luis Muller Alipanah Parviz Shenyang Huang Andrew Fitzgibbon AI4CE 48 5 0 23 Apr 2024
Improving Chinese Character Representation with Formation Tree Yang Hong Yinfei Li Xiaojun Qiao Rui Li Junsong Zhang VLM 51 1 0 19 Apr 2024
CSA-Trans: Code Structure Aware Transformer for AST Saeyoon Oh Shin Yoo 44 1 0 07 Apr 2024
On the Theoretical Expressive Power and the Design Space of Higher-Order Graph Transformers Cai Zhou Rose Yu Yusu Wang 41 7 0 04 Apr 2024
FraGNNet: A Deep Probabilistic Model for Mass Spectrum Prediction A. Young Fei Wang D. Wishart Bo Wang Hannes L. Röst Russell Greiner 53 3 0 02 Apr 2024
A Semantic Mention Graph Augmented Model for Document-Level Event Argument Extraction Jian Zhang Chang-Qing Yang Haiping Zhu Qika Lin Fangzhi Xu Jun Liu 44 1 0 12 Mar 2024
Attention is all you need for boosting graph convolutional neural network Yinwei Wu GNN 36 0 0 10 Mar 2024
A Second Look on BASS -- Boosting Abstractive Summarization with Unified Semantic Graphs -- A Replication Study Osman Alperen Koras Jorg Schlotterer Christin Seifert 34 1 0 05 Mar 2024
LLM-Enhanced User-Item Interactions: Leveraging Edge Information for Optimized Recommendations Xinyuan Wang Liang Wu Liangjie Hong Hao Liu Yanjie Fu 34 18 0 14 Feb 2024
Highly Accurate Disease Diagnosis and Highly Reproducible Biomarker Identification with PathFormer Zehao Dong Qihang Zhao Philip R. O. Payne Michael Province C. Cruchaga Muhan Zhang Tianyu Zhao Yixin Chen Fuhai Li AI4CE 33 6 0 11 Feb 2024
Triplet Interaction Improves Graph Transformers: Accurate Molecular Graph Learning with Triplet Graph Transformers Md Shamim Hussain Mohammed J Zaki D. Subramanian ViT 36 6 0 07 Feb 2024
Graph Neural Machine: A New Model for Learning with Tabular Data Giannis Nikolentzos Siyun Wang J. Lutzeyer Michalis Vazirgiannis 34 0 0 05 Feb 2024
Topology-Informed Graph Transformer Yuncheol Choi Sun Woo Park Minho Lee Youngho Woo 36 3 0 03 Feb 2024
Graph-Mamba: Towards Long-Range Graph Sequence Modeling with Selective State Spaces Chloe X. Wang Oleksii Tsepa Jun Ma Bo Wang Mamba 32 87 0 01 Feb 2024
LaneGraph2Seq: Lane Topology Extraction with Language Model via Vertex-Edge Encoding and Connectivity Enhancement Renyuan Peng Xinyue Cai Hang Xu Jiachen Lu Feng Wen Wei Zhang Li Zhang 30 4 0 31 Jan 2024
FedGT: Federated Node Classification with Scalable Graph Transformer Zaixin Zhang Qingyong Hu Yang Yu Weibo Gao Qi Liu FedML 46 2 0 26 Jan 2024
Generative Model for Constructing Reaction Path from Initial to Final States Akihide Hayashi So Takamoto Ju Li Daisuke Okanohara 33 1 0 19 Jan 2024
Graph Elimination Networks Shuo Wang Ge Cheng Yun Zhang AI4CE GNN 28 0 0 02 Jan 2024
APGL4SR: A Generic Framework with Adaptive and Personalized Global Collaborative Information in Sequential Recommendation Mingjia Yin Hao Wang Xiang Xu Likang Wu Sirui Zhao Wei Guo Yong Liu Ruiming Tang Defu Lian Enhong Chen LMTD AI4TS HAI 49 25 0 06 Nov 2023