A Review of Biomedical Datasets Relating to Drug Discovery: A Knowledge Graph Perspective

19 February 2021

Papers citing "A Review of Biomedical Datasets Relating to Drug Discovery: A Knowledge Graph Perspective"

29 / 29 papers shown

Title
KG4Diagnosis: A Hierarchical Multi-Agent LLM Framework with Knowledge Graph Enhancement for Medical Diagnosis Kaiwen Zuo Yirui Jiang Fan Mo Pietro Lio 88 6 0 22 Dec 2024
The Role of Graph Topology in the Performance of Biomedical Knowledge Graph Completion Models A. Cattaneo Stephen Bonner Thomas Martynec Carlo Luschi Ian P Barrett Daniel Justus 35 0 0 06 Sep 2024
Improving rule mining via embedding-based link prediction N'Dah Jean Kouagou Arif Yilmaz Michel Dumontier A. N. Ngomo AI4CE 30 0 0 14 Jun 2024
$MOTI$\mathcal{VE}$: A Drug-Target Interaction Graph For Inductive Link Prediction$ MOTI $\mathcal{VE}$ : A Drug-Target Interaction Graph For Inductive Link Prediction John Arevalo Ellen Su Anne E Carpenter Shantanu Singh 32 2 0 12 Jun 2024
LinkLogic: A New Method and Benchmark for Explainable Knowledge Graph Predictions Niraj Kumar Singh G. Polleti Saee Paliwal Rachel Hodos-Nkhereanye 37 0 0 02 Jun 2024
Accurate and interpretable drug-drug interaction prediction enabled by knowledge subgraph learning Yaqing Wang Zaifei Yang Quanming Yao 21 21 0 25 Nov 2023
Natural Language Processing for Drug Discovery Knowledge Graphs: promises and pitfalls J. C. G. Jeynes Tim James Matthew Corney 20 2 0 24 Oct 2023
Knowledge Engineering using Large Language Models Bradley Paul Allen Lise Stork Paul T. Groth 15 24 0 01 Oct 2023
Body Fat Estimation from Surface Meshes using Graph Neural Networks Tamara T. Mueller Si-Ping Zhou Sophie Starck F. Jungmann Alexander Ziller Orhun Aksoy Danylo Movchan R. Braren Georgios Kaissis Daniel Rueckert 3DH 26 3 0 13 Jul 2023
Comprehensive evaluation of deep and graph learning on drug-drug interactions prediction Xuan Lin Lichang Dai Yafang Zhou Zunpeng Yu Wen Zhang ... Li Zeng Hao-Heng Chen Bosheng Song Philip S. Yu Xiangxiang Zeng GNN 21 56 0 08 Jun 2023
Causal Intervention for Measuring Confidence in Drug-Target Interaction Prediction Wenting Ye Chen Li Yang Xie Wen Zhang Hong-Yu Zhang Bowen Wang Debo Cheng Zaiwen Feng 11 0 0 31 May 2023
Analysing Biomedical Knowledge Graphs using Prime Adjacency Matrices K. Bougiatiotis G. Paliouras 25 1 0 17 May 2023
Graph Representation Learning for Interactive Biomolecule Systems Xinye Xiong Bingxin Zhou Yu Guang Wang AI4CE GNN 38 0 0 05 Apr 2023
Knowledge-augmented Graph Machine Learning for Drug Discovery: A Survey from Precision to Interpretability Zhiqiang Zhong A. Barkova Davide Mottin 24 8 0 16 Feb 2023
KGML-xDTD: A Knowledge Graph-based Machine Learning Framework for Drug Treatment Prediction and Mechanism Description Chunyu Ma Zhihan Zhou Han Liu D. Koslicki 13 16 0 30 Nov 2022
BESS: Balanced Entity Sampling and Sharing for Large-Scale Knowledge Graph Completion A. Cattaneo Daniel Justus Harry Mellor Douglas Orr Jérôme Maloberti Ziqiang Liu Thorin Farnsworth Andrew Fitzgibbon Bla.zej Banaszewski Carlo Luschi 16 4 0 22 Nov 2022
Review of Natural Language Processing in Pharmacology D. Trajanov Vangel Trajkovski Makedonka Dimitrieva Jovana Dobreva Milos Jovanovik Matej Klemen Alevs vZagar Marko Robnik-vSikonja LM&MA 23 7 0 22 Aug 2022
OntoMerger: An Ontology Integration Library for Deduplicating and Connecting Knowledge Graph Nodes D. Geleta A. Nikolov Mark ODonoghue Benedek Rozemberczki A. Gogleva Valentina Tamma Terry R. Payne 17 4 0 05 Jun 2022
TigerLily: Finding drug interactions in silico with the Graph Benedek Rozemberczki GNN 26 0 0 18 Apr 2022
A Unified Framework for Rank-based Evaluation Metrics for Link Prediction in Knowledge Graphs Charles Tapley Hoyt M. Berrendorf Mikhail Galkin Volker Tresp Benjamin M. Gyori 26 20 0 14 Mar 2022
Mining On Alzheimer's Diseases Related Knowledge Graph to Identity Potential AD-related Semantic Triples for Drug Repurposing Yi Nian Xinyue Hu Rui Zhang Jingna Feng Jingcheng Du Fang Li Yong Chen Cui Tao 11 16 0 17 Feb 2022
TrialGraph: Machine Intelligence Enabled Insight from Graph Modelling of Clinical Trials Christopher Yacoumatos Stefano Bragaglia Anshul Kanakia Nils Svangård J. Mangion Claire R. Donoghue J. Weatherall F. Khan K. Shameer 46 3 0 15 Dec 2021
Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs Stephen Bonner Ufuk Kirik O. Engkvist Jian Tang Ian P Barrett 22 19 0 13 Dec 2021
Explainable Biomedical Recommendations via Reinforcement Learning Reasoning on Knowledge Graphs G. Edwards Sebastian Nilsson Benedek Rozemberczki Eliseo Papa 23 12 0 20 Nov 2021
Neural Class Expression Synthesis N'Dah Jean Kouagou Stefan Heindorf Caglar Demir A. N. Ngomo 11 8 0 16 Nov 2021
Scientific Language Models for Biomedical Knowledge Base Completion: An Empirical Study Rahul Nadkarni David Wadden Iz Beltagy Noah A. Smith Hannaneh Hajishirzi Tom Hope 35 27 0 17 Jun 2021
A Knowledge Graph-Enhanced Tensor Factorisation Model for Discovering Drug Targets Cheng Ye Rowan Swiers Stephen Bonner Ian P Barrett 35 12 0 20 May 2021
Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery Stephen Bonner Ian P Barrett Cheng Ye Rowan Swiers O. Engkvist Charles Tapley Hoyt William L. Hamilton 58 51 0 17 May 2021
Heterogeneous Graph Transformer Ziniu Hu Yuxiao Dong Kuansan Wang Yizhou Sun 185 1,170 0 03 Mar 2020