Parallel String Graph Construction and Transitive Reduction for De Novo
Genome Assembly

Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly

20 October 2020

Katherine Yelick

Papers citing "Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly"

7 / 7 papers shown

Title
High-Performance Sorting-Based k-mer Counting in Distributed Memory with Flexible Hybrid Parallelism Yifan Li Giulia Guidi 25 1 0 10 Jul 2024
RDMA-Based Algorithms for Sparse Matrix Multiplication on GPUs Benjamin Brock A. Buluç Katherine Yelick 23 2 0 29 Nov 2023
GPU Scheduler for De Novo Genome Assembly with Multiple MPI Processes Minhao Li Siyu Wang Guanghao Wei 21 0 0 13 Sep 2023
Space Efficient Sequence Alignment for SRAM-Based Computing: X-Drop on the Graphcore IPU Luk Burchard Max Zhao J. Langguth A. Buluç Giulia Guidi 24 6 0 17 Apr 2023
Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly Giulia Guidi Gabriel Raulet D. Rokhsar L. Oliker Katherine Yelick A. Buluç 19 3 0 10 Jul 2022
Combinatorial BLAS 2.0: Scaling combinatorial algorithms on distributed-memory systems A. Azad Oguz Selvitopi Md Taufique Hussain J. Gilbert A. Buluç 37 26 0 28 Jun 2021
A Systematic Survey of General Sparse Matrix-Matrix Multiplication Jianhua Gao Weixing Ji Fangli Chang Zhaonian Tan Bingxin Wei Zeming Liu Yueyan Zhao 26 57 0 26 Feb 2020