PhenoTagger: A Hybrid Method for Phenotype Concept Recognition using
Human Phenotype Ontology

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PhenoTagger: A Hybrid Method for Phenotype Concept Recognition using Human Phenotype Ontology

17 September 2020

Sandhya Xirasagar

Peter N. Robinson

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Papers citing "PhenoTagger: A Hybrid Method for Phenotype Concept Recognition using Human Phenotype Ontology"

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Title
KU AIGEN ICL EDI@BC8 Track 3: Advancing Phenotype Named Entity Recognition and Normalization for Dysmorphology Physical Examination Reports Hajung Kim Chanhwi Kim Jiwoong Sohn Tim Beck Marek Rei ... T Ian Simpson Joram M Posma Antoine Lain Mujeen Sung Jaewoo Kang MedIm 67 0 0 17 Jan 2025
Structured Extraction of Real World Medical Knowledge using LLMs for Summarization and Search Edward Kim Manil Shrestha Richard Foty Tom DeLay Vicki Seyfert-Margolis 161 1 0 16 Dec 2024
RareBench: Can LLMs Serve as Rare Diseases Specialists? Xuanzhong Chen Xiaohao Mao Qihan Guo Lun Wang Shuyang Zhang Ting Chen ELM LM&MA AI4MH 92 25 0 09 Feb 2024
Exploring the Reversal Curse and Other Deductive Logical Reasoning in BERT and GPT-Based Large Language Models Da Wu Jing Yang Kai Wang LRM 71 6 0 06 Dec 2023
An evaluation of GPT models for phenotype concept recognition T. Groza Harry Caufield D. Gration Gareth Baynam M. Haendel Peter N. Robinson Christopher J. Mungall Justin P Reese LM&MA 37 23 0 29 Sep 2023
Enhancing Phenotype Recognition in Clinical Notes Using Large Language Models: PhenoBCBERT and PhenoGPT Jing Yang Cong Liu Wendy Deng Dangwei Wu Chunhua Weng Yunyun Zhou Kai Wang 54 21 0 11 Aug 2023