Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing

31 July 2020

Xiaodong Liu

Papers citing "Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing"

50 / 243 papers shown

Title
Développement automatique de lexiques pour les concepts émergents : une exploration méthodologique Revekka Kyriakoglou Anna Pappa Jilin He A. Schoen P. Laurens Markarit Vartampetian P. Larédo Tita Kyriacopoulou 44 0 0 10 Jun 2024
GAMedX: Generative AI-based Medical Entity Data Extractor Using Large Language Models Mohammed-Khalil Ghali Abdelrahman Farrag Hajar Sakai Hicham El Baz Yu Jin Sarah Lam LM&MA MedIm 40 8 0 31 May 2024
Entangled Relations: Leveraging NLI and Meta-analysis to Enhance Biomedical Relation Extraction William Hogan Jingbo Shang 20 0 0 31 May 2024
''You should probably read this'': Hedge Detection in Text Denys Katerenchuk Rivka Levitan 41 1 0 22 May 2024
BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once Theodore Zhao Yu Gu Jianwei Yang Naoto Usuyama Ho Hin Lee ... B. Piening Carlo Bifulco Mu-Hsin Wei Hoifung Poon Sheng Wang MedIm 41 23 0 21 May 2024
Exploration of Masked and Causal Language Modelling for Text Generation Nicolo Micheletti Samuel Belkadi Lifeng Han Goran Nenadic 44 6 0 21 May 2024
A Survey of Generative Techniques for Spatial-Temporal Data Mining Qianru Zhang Haixin Wang Cheng Long Liangcai Su Xingwei He ... Tailin Wu Hongzhi Yin Siu-Ming Yiu Qi Tian Christian S. Jensen AI4TS 57 7 0 15 May 2024
Pseudo-Prompt Generating in Pre-trained Vision-Language Models for Multi-Label Medical Image Classification Yaoqin Ye Junjie Zhang Hongwei Shi MedIm VLM 55 0 0 10 May 2024
Simplifying Multimodality: Unimodal Approach to Multimodal Challenges in Radiology with General-Domain Large Language Model Seonhee Cho Choonghan Kim Jiho Lee Chetan Chilkunda Sujin Choi Joo Heung Yoon 53 0 0 29 Apr 2024
CRE-LLM: A Domain-Specific Chinese Relation Extraction Framework with Fine-tuned Large Language Model Zhengpeng Shi Haoran Luo LRM ALM 40 2 0 28 Apr 2024
VANER: Leveraging Large Language Model for Versatile and Adaptive Biomedical Named Entity Recognition Junyi Bian W. Zhai Xiaodi Huang Jiaxuan Zheng Shanfeng Zhu 43 2 0 27 Apr 2024
UMass-BioNLP at MEDIQA-M3G 2024: DermPrompt -- A Systematic Exploration of Prompt Engineering with GPT-4V for Dermatological Diagnosis Parth Vashisht Abhilasha Lodha Mukta Maddipatla Zonghai Yao Avijit Mitra Zhichao Yang Junda Wang Sunjae Kwon Hong-ye Yu LM&MA 36 1 0 27 Apr 2024
Detection of fields of applications in biomedical abstracts with the support of argumentation elements Mariana Neves 25 0 0 09 Apr 2024
SemEval-2024 Task 2: Safe Biomedical Natural Language Inference for Clinical Trials Mael Jullien Marco Valentino André Freitas LM&MA 46 41 0 07 Apr 2024
IITK at SemEval-2024 Task 2: Exploring the Capabilities of LLMs for Safe Biomedical Natural Language Inference for Clinical Trials Shreyasi Mandal Ashutosh Modi LRM ELM 41 3 0 06 Apr 2024
Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information Gilchan Park S. McCorkle Carlos Soto Ian K. Blaby Shinjae Yoo 32 6 0 08 Mar 2024
JMLR: Joint Medical LLM and Retrieval Training for Enhancing Reasoning and Professional Question Answering Capability Junda Wang Zhichao Yang Zonghai Yao Hong-ye Yu BDL AI4MH LRM 40 31 0 27 Feb 2024
How Important is Domain Specificity in Language Models and Instruction Finetuning for Biomedical Relation Extraction? Aviv Brokman Ramakanth Kavuluru LM&MA ALM 34 3 0 21 Feb 2024
ProtChatGPT: Towards Understanding Proteins with Large Language Models Chao Wang Hehe Fan Ruijie Quan Yi Yang 37 14 0 15 Feb 2024
Chem-FINESE: Validating Fine-Grained Few-shot Entity Extraction through Text Reconstruction Qingyun Wang Zixuan Zhang Hongxiang Li Xuan Liu Jiawei Han Huimin Zhao Heng Ji 49 1 0 18 Jan 2024
Developing ChatGPT for Biology and Medicine: A Complete Review of Biomedical Question Answering Qing Li Lei Li Yu Li LM&MA AI4MH 43 6 0 15 Jan 2024
UniChest: Conquer-and-Divide Pre-training for Multi-Source Chest X-Ray Classification Tianjie Dai Ruipeng Zhang Feng Hong Jiangchao Yao Ya Zhang Yanfeng Wang 38 8 0 18 Dec 2023
Leveraging Domain Adaptation and Data Augmentation to Improve Quránic IR in English and Arabic Vera Pavlova 28 2 0 05 Dec 2023
De-identification of clinical free text using natural language processing: A systematic review of current approaches Aleksandar Kovacevic Bojana Bašaragin Nikola Milosevic Goran Nenadic OOD 31 17 0 28 Nov 2023
Large Language Models as Topological Structure Enhancers for Text-Attributed Graphs Shengyin Sun Yuxiang Ren Chen Ma Xuecang Zhang 118 20 0 24 Nov 2023
A Systematic Review of Deep Learning-based Research on Radiology Report Generation Chang Liu Yuanhe Tian Yan Song MedIm 47 16 0 23 Nov 2023
nach0: Multimodal Natural and Chemical Languages Foundation Model M. Livne Z. Miftahutdinov E. Tutubalina Maksim Kuznetsov Daniil Polykovskiy ... Aastha Jhunjhunwala Anthony Costa Alex Aliper Alán Aspuru-Guzik Alex Zhavoronkov AI4CE 29 13 0 21 Nov 2023
CARE: Extracting Experimental Findings From Clinical Literature Aakanksha Naik Bailey Kuehl Erin Bransom Doug Downey Tom Hope 33 1 0 16 Nov 2023
Evaluating multiple large language models in pediatric ophthalmology J. Holmes Rui Peng Yiwei Li Jinyu Hu Zheng Liu ... Wei Liu Hong Wei Jie Zou Tianming Liu Yi Shao AI4Ed ELM LM&MA 24 0 0 07 Nov 2023
Exploring the Boundaries of GPT-4 in Radiology Qianchu Liu Stephanie L. Hyland Shruthi Bannur Kenza Bouzid Daniel Coelho De Castro ... Anja Thieme A. Nori M. Lungren Ozan Oktay Javier Alvarez-Valle LM&MA AI4CE 42 36 0 23 Oct 2023
PromptCBLUE: A Chinese Prompt Tuning Benchmark for the Medical Domain Wei-wei Zhu Xiaoling Wang Huanran Zheng Mosha Chen Buzhou Tang ELM LM&MA 31 33 0 22 Oct 2023
CLIFT: Analysing Natural Distribution Shift on Question Answering Models in Clinical Domain Ankit Pal 19 2 0 19 Oct 2023
Data Augmentations for Improved (Large) Language Model Generalization Amir Feder Yoav Wald Claudia Shi Suchi Saria David M. Blei OOD CML 34 7 0 19 Oct 2023
Emerging Challenges in Personalized Medicine: Assessing Demographic Effects on Biomedical Question Answering Systems Sagi Shaier Kevin Bennett Lawrence E Hunter K. Wense 31 0 0 16 Oct 2023
Qilin-Med: Multi-stage Knowledge Injection Advanced Medical Large Language Model Qichen Ye Junling Liu Dading Chong Peilin Zhou Yining Hua ... Meng Cao Ziming Wang Xuxin Cheng Andrew Liu Zhenhua Guo AI4MH LM&MA ELM 35 20 0 13 Oct 2023
Using Weak Supervision and Data Augmentation in Question Answering Chumki Basu Binyuan Hui Allen McIntosh Wei Wang J. Wullert OOD 52 0 0 28 Sep 2023
Missing-modality Enabled Multi-modal Fusion Architecture for Medical Data Muyu Wang Shiyu Fan Yichen Li Hui Chen MedIm 17 1 0 27 Sep 2023
UniBrain: Universal Brain MRI Diagnosis with Hierarchical Knowledge-enhanced Pre-training Jiayu Lei Lisong Dai Haoyun Jiang Chaoyi Wu Xiaoman Zhang ... Weidi Xie Yanyong Zhang Yuehua Li Ya Zhang Yanfeng Wang 32 10 0 13 Sep 2023
Knowledge-tuning Large Language Models with Structured Medical Knowledge Bases for Reliable Response Generation in Chinese Hao Wang Sendong Zhao Zewen Qiang Zijian Li Nuwa Xi ... Haoqiang Guo Yuhan Chen Haoming Xu Bing Qin Ting Liu LM&MA AI4MH 34 17 0 08 Sep 2023
Aligning Large Language Models for Clinical Tasks Supun Manathunga Isuru Hettigoda LM&MA ELM AI4MH 36 10 0 06 Sep 2023
Exploring Transfer Learning in Medical Image Segmentation using Vision-Language Models K. Poudel Manish Dhakal Prasiddha Bhandari Rabin Adhikari Safal Thapaliya Bishesh Khanal VLM 30 17 0 15 Aug 2023
MC-DRE: Multi-Aspect Cross Integration for Drug Event/Entity Extraction Jie Yang S. Han Siqu Long Josiah Poon Goran Nenadic 45 0 0 12 Aug 2023
Demonstration-based learning for few-shot biomedical named entity recognition under machine reading comprehension Leilei Su Jian Chen Yifan Peng Cong Sun 36 2 0 12 Aug 2023
Med-Flamingo: a Multimodal Medical Few-shot Learner Michael Moor Qian Huang Shirley Wu Michihiro Yasunaga C. Zakka Yashodhara Dalmia E. Reis Pranav Rajpurkar J. Leskovec LM&MA MedIm 27 233 0 27 Jul 2023
UMLS-KGI-BERT: Data-Centric Knowledge Integration in Transformers for Biomedical Entity Recognition Aidan Mannion Thierry Chevalier D. Schwab Lorraine Goeuriot MedIm 51 3 0 20 Jul 2023
Extending the Frontier of ChatGPT: Code Generation and Debugging Fardin Ahsan Sakib Saadat Hasan Khan A. Karim ALM LLMAG ELM 31 41 0 17 Jul 2023
DARE: Towards Robust Text Explanations in Biomedical and Healthcare Applications Adam Ivankay Mattia Rigotti P. Frossard OOD MedIm 34 1 0 05 Jul 2023
Hierarchical Pretraining for Biomedical Term Embeddings Bryan Cai Sihang Zeng Yucong Lin Zheng Yuan D. Zhou Lu Tian 38 0 0 01 Jul 2023
DMNER: Biomedical Entity Recognition by Detection and Matching Junyi Bian Rongze Jiang W. Zhai Tianyang Huang Hong Zhou Shanfeng Zhu 32 2 0 27 Jun 2023
Natural Language Processing in Electronic Health Records in Relation to Healthcare Decision-making: A Systematic Review Elias Hossain R. Rana N. Higgins J. Soar P. Barua Anthony R. Pisani Ph. D K. Turner 34 182 0 22 Jun 2023