Med-BERT: pre-trained contextualized embeddings on large-scale structured electronic health records for disease prediction

22 May 2020

Papers citing "Med-BERT: pre-trained contextualized embeddings on large-scale structured electronic health records for disease prediction"

50 / 209 papers shown

Title
Consensus of state of the art mortality prediction models: From all-cause mortality to sudden death prediction Yola Jones F. Deligianni Jeffrey Stephen Dalton P. Pellicori John G. F. Cleland OOD 26 0 0 30 Aug 2023
Multimodal Foundation Models For Echocardiogram Interpretation M. Christensen Milos Vukadinovic N. Yuan David Ouyang MedIm 29 7 0 29 Aug 2023
Enhancing Phenotype Recognition in Clinical Notes Using Large Language Models: PhenoBCBERT and PhenoGPT Jing Yang Cong Liu Wendy Deng Dangwei Wu Chunhua Weng Yunyun Zhou Kai Wang 27 20 0 11 Aug 2023
UMLS-KGI-BERT: Data-Centric Knowledge Integration in Transformers for Biomedical Entity Recognition Aidan Mannion Thierry Chevalier D. Schwab Lorraine Goeuriot MedIm 51 3 0 20 Jul 2023
Interpreting deep embeddings for disease progression clustering Anna Munoz-Farre Antonios Poulakakis-Daktylidis Dilini M. Kothalawala A. Rodriguez-Martinez 36 0 0 12 Jul 2023
Multi-modal Graph Learning over UMLS Knowledge Graphs Manuel Burger Gunnar Rätsch Rita Kuznetsova 19 2 0 10 Jul 2023
EHRSHOT: An EHR Benchmark for Few-Shot Evaluation of Foundation Models Michael Wornow Rahul Thapa E. Steinberg Jason Alan Fries N. Shah VLM OOD AI4MH 31 37 0 05 Jul 2023
Transformers in Healthcare: A Survey Subhash Nerella S. Bandyopadhyay Jiaqing Zhang Miguel Contreras Scott Siegel ... Jessica Sena B. Shickel A. Bihorac Kia Khezeli Parisa Rashidi MedIm AI4CE 26 25 0 30 Jun 2023
Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events Matthew B. A. McDermott Bret A. Nestor Peniel Argaw I. Kohane AI4TS 32 21 0 20 Jun 2023
Weakly supervised information extraction from inscrutable handwritten document images S. Paul Gagan Madan Akankshya Mishra N. Hegde Pradeep Kumar Gaurav Aggarwal MedIm 26 3 0 12 Jun 2023
ECGBERT: Understanding Hidden Language of ECGs with Self-Supervised Representation Learning Seokmin Choi Sajad Mousavi Phillip Si Haben Yhdego Fatemeh Khadem Fatemeh Afghah SSL 37 3 0 10 Jun 2023
Temporal-spatial Correlation Attention Network for Clinical Data Analysis in Intensive Care Unit Weizhi Nie Yu-Yi Yu Chen Zhang Dan Song Lina Zhao Yunru Bai 32 7 0 03 Jun 2023
Domain Specialization as the Key to Make Large Language Models Disruptive: A Comprehensive Survey Chen Ling Xujiang Zhao Jiaying Lu Chengyuan Deng Can Zheng ... Chris White Quanquan Gu Jian Pei Carl Yang Liang Zhao ALM 33 126 0 30 May 2023
Diagnosing Transformers: Illuminating Feature Spaces for Clinical Decision-Making Aliyah R. Hsu Yeshwanth Cherapanamjeri Briton Park Tristan Naumann A. Odisho Bin-Xia Yu MedIm 29 0 0 27 May 2023
BiomedGPT: A Unified and Generalist Biomedical Generative Pre-trained Transformer for Vision, Language, and Multimodal Tasks Kai Zhang Jun Yu Eashan Adhikarla Rong Zhou Zhilin Yan ... Xun Chen Yong Chen Quanzheng Li Hongfang Liu Lichao Sun LM&MA MedIm 37 157 0 26 May 2023
Federated Learning of Medical Concepts Embedding using BEHRT Ofir Ben Shoham Nadav Rappoport FedML OOD 24 12 0 22 May 2023
LATTE: Label-efficient Incident Phenotyping from Longitudinal Electronic Health Records Jun Wen Jue Hou Clara-Lea Bonzel Yihan Zhao Victor Castro ... J. M. Gaziano K. Liao Junwei Lu Kelly Cho Tianxi Cai BDL 26 4 0 19 May 2023
Generative Pre-trained Transformer: A Comprehensive Review on Enabling Technologies, Potential Applications, Emerging Challenges, and Future Directions Gokul Yenduri M. Ramalingam G. C. Selvi Y. Supriya Gautam Srivastava ... Rutvij H. Jhaveri B. Prabadevi Weizheng Wang Athanasios V. Vasilakos Thippa Reddy Gadekallu AI4CE LM&MA 28 168 0 11 May 2023
DuETT: Dual Event Time Transformer for Electronic Health Records Alex Labach Aslesha Pokhrel Xiao Shi Huang S. Zuberi S. Yi M. Volkovs T. Poutanen Rahul G. Krishnan AI4TS MedIm 28 3 0 25 Apr 2023
Toward Cohort Intelligence: A Universal Cohort Representation Learning Framework for Electronic Health Record Analysis Changshuo Liu Wenqiao Zhang Beng Chin Ooi J. Yip Lingze Zeng Kaiping Zheng 14 1 0 10 Apr 2023
Longitudinal Multimodal Transformer Integrating Imaging and Latent Clinical Signatures From Routine EHRs for Pulmonary Nodule Classification Thomas Z. Li J. M. Still Kaiwen Xu Ho Hin Lee L. Cai ... M. Kammer K. Sandler Fabien Maldonado Bennett A. Landman Thomas A. Lasko 27 7 0 06 Apr 2023
A Bibliometric Review of Large Language Models Research from 2017 to 2023 Lizhou Fan Lingyao Li Zihui Ma Sanggyu Lee Huizi Yu Libby Hemphill 45 149 0 03 Apr 2023
Soft-prompt tuning to predict lung cancer using primary care free-text Dutch medical notes Auke Elfrink Iacopo Vagliano A. Abu-Hanna Iacer Calixto 6 4 0 28 Mar 2023
Lay Text Summarisation Using Natural Language Processing: A Narrative Literature Review Oliver Vinzelberg M. Jenkins Gordon Morison David McMinn Z. Tieges 37 6 0 24 Mar 2023
ChatGPT for Shaping the Future of Dentistry: The Potential of Multi-Modal Large Language Model Hanyao Huang Ou Zheng Dongdong Wang Jiayi Yin Zijin Wang ... H. Yin Chuan Xu Renjie Yang Q. Zheng B. Shi MedIm AI4MH AI4CE LM&MA 58 176 0 23 Mar 2023
The Shaky Foundations of Clinical Foundation Models: A Survey of Large Language Models and Foundation Models for EMRs Michael Wornow Yizhe Xu Rahul Thapa Birju S. Patel E. Steinberg Scott L. Fleming M. Pfeffer Jason Alan Fries N. Shah LM&MA 28 32 0 22 Mar 2023
ExBEHRT: Extended Transformer for Electronic Health Records to Predict Disease Subtypes & Progressions M. Rupp Oriane Peter T. Pattipaka 30 9 0 22 Mar 2023
Large AI Models in Health Informatics: Applications, Challenges, and the Future Jianing Qiu Lin Li Jiankai Sun Jiachuan Peng Peilun Shi ... Bo Xiao Wu Yuan Ningli Wang Dong Xu Benny Lo AI4MH LM&MA 42 128 0 21 Mar 2023
Hospitalization Length of Stay Prediction using Patient Event Sequences Emil Riis Hansen Thomas D. Nielsen Thomas Mulvad M. Stausholm Tomer Sagi Katja Hose AI4TS 15 0 0 20 Mar 2023
Rediscovery of CNN's Versatility for Text-based Encoding of Raw Electronic Health Records Eunbyeol Cho Min Jae Lee Kyunghoon Hur Jiyoun Kim Jinsung Yoon Edward Choi 24 0 0 15 Mar 2023
MEDBERT.de: A Comprehensive German BERT Model for the Medical Domain Keno K. Bressem Jens-Michalis Papaioannou Paul Grundmann Florian Borchert Lisa Christine Adams ... Moritz Augustin Lennart Grosser Marcus R. Makowski Hugo J. W. L. Aerts Alexander Loser AI4MH 15 29 0 14 Mar 2023
Multimodal Data Integration for Oncology in the Era of Deep Neural Networks: A Review Asim Waqas Aakash Tripathi Ravichandran Ramachandran Paul Stewart Ghulam Rasool AI4CE 42 32 0 11 Mar 2023
Transformadores: Fundamentos teoricos y Aplicaciones J. D. L. Torre 78 0 0 18 Feb 2023
Auditing large language models: a three-layered approach Jakob Mokander Jonas Schuett Hannah Rose Kirk Luciano Floridi AILaw MLAU 48 196 0 16 Feb 2023
Towards Fair Machine Learning Software: Understanding and Addressing Model Bias Through Counterfactual Thinking Zichong Wang Yangze Zhou M. Qiu I. Haque Laura Brown Yi He Jianwu Wang David Lo Wenbin Zhang FaML 28 24 0 16 Feb 2023
Clinical Decision Transformer: Intended Treatment Recommendation through Goal Prompting Seunghyun Lee D. Lee Sujeong Im N. Kim Sung-Min Park 30 11 0 01 Feb 2023
Cross-lingual German Biomedical Information Extraction: from Zero-shot to Human-in-the-Loop Siting Liang Mareike Hartmann Daniel Sonntag 23 3 0 24 Jan 2023
AI vs. Human -- Differentiation Analysis of Scientific Content Generation Yongqiang Ma Jiawei Liu Fan Yi Qikai Cheng Yong Huang Wei Lu Xiaozhong Liu DeLMO 12 59 0 24 Jan 2023
MOTOR: A Time-To-Event Foundation Model For Structured Medical Records E. Steinberg Jason Alan Fries Yizhe Xu N. Shah OOD AI4TS 38 13 0 09 Jan 2023
Enhancing the prediction of disease outcomes using electronic health records and pretrained deep learning models Zhichao Yang Weisong Liu D. Berlowitz Hongfeng Yu AI4CE 22 0 0 22 Dec 2022
PLUE: Language Understanding Evaluation Benchmark for Privacy Policies in English Jianfeng Chi Wasi Uddin Ahmad Yuan Tian Kai-Wei Chang AILaw ELM 21 10 0 20 Dec 2022
Foundation models in brief: A historical, socio-technical focus Johannes Schneider VLM 31 9 0 17 Dec 2022
LegalRelectra: Mixed-domain Language Modeling for Long-range Legal Text Comprehension Wenyue Hua Yuchen Zhang Zhe Chen Josie Li Melanie Weber AILaw 29 7 0 16 Dec 2022
Foresight -- Generative Pretrained Transformer (GPT) for Modelling of Patient Timelines using EHRs Z. Kraljevic D. Bean Anthony Shek R. Bendayan H. Hemingway ... Alfie Baston Jack Ross Esther Idowu J. Teo Richard J. B. Dobson AI4TS 24 20 0 13 Dec 2022
Explainability of Traditional and Deep Learning Models on Longitudinal Healthcare Records L. Cheong Tesfagabir Meharizghi Wynona Black Yang Guang Weilin Meng FAtt AI4TS 13 0 0 22 Nov 2022
Semantic Decomposition Improves Learning of Large Language Models on EHR Data David A. Bloore R. Gauriau Anna Decker Jacob Oppenheim 29 1 0 14 Nov 2022
AD-BERT: Using Pre-trained contextualized embeddings to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease Chengsheng Mao Jie Xu Luke Rasmussen Yikuan Li P. Adekkanattu ... R. Vassar Guoqian Jiang Fei Wang Jyotishman Pathak Yuan Luo 27 6 0 07 Nov 2022
Dynamic Survival Transformers for Causal Inference with Electronic Health Records P. Chatha Yixin Wang Zhenke Wu Jeffrey Regier CML 41 1 0 25 Oct 2022
On the Transformation of Latent Space in Fine-Tuned NLP Models Nadir Durrani Hassan Sajjad Fahim Dalvi Firoj Alam 39 18 0 23 Oct 2022
Handling missing values in healthcare data: A systematic review of deep learning-based imputation techniques Mingxuan Liu Siqi Li Han Yuan M. Ong Yilin Ning F. Xie S. Saffari V. Volovici Bibhas Chakraborty Nan Liu AI4TS 27 52 0 15 Oct 2022