PanNuke Dataset Extension, Insights and Baselines

24 March 2020

Jevgenij Gamper

Navid Alemi Koohbanani

Papers citing "PanNuke Dataset Extension, Insights and Baselines"

25 / 25 papers shown

Title
Multi-Modal Explainable Medical AI Assistant for Trustworthy Human-AI Collaboration Honglong Yang Shanshan Song Yi Qin Lehan Wang Haonan Wang Xinpeng Ding Qixiang Zhang Bodong Du X. Li LM&MA 34 0 0 11 May 2025
Histo-Miner: Deep Learning based Tissue Features Extraction Pipeline from H&E Whole Slide Images of Cutaneous Squamous Cell Carcinoma Lucas Sancéré Carina Lorenz Doris Helbig Oana-Diana Persa Sonja Dengler ... Martim Laimer Anne Fröhlich Jennifer Landsberg Johannes Brägelmann Katarzyna Bozek 44 0 0 07 May 2025
UniBiomed: A Universal Foundation Model for Grounded Biomedical Image Interpretation Linshan Wu Yuxiang Nie Sunan He Jiaxin Zhuang Hao Chen LM&MA MedIm 75 0 0 30 Apr 2025
A Lightweight and Extensible Cell Segmentation and Classification Model for Whole Slide Images N. Shvetsov T. Kilvaer M. Tafavvoghi Anders Sildnes Kajsa Møllersen Lill-ToveRasmussen Busund L. A. Bongo VLM 71 1 0 26 Feb 2025
Efficient and Comprehensive Feature Extraction in Large Vision-Language Model for Pathology Analysis Shengxuming Zhang Weihan Li Tianhong Gao Jiacong Hu Haoming Luo Mingli Song Xiuming Zhang Mingli Song Zunlei Feng LM&MA 103 0 0 12 Dec 2024
MedTrinity-25M: A Large-scale Multimodal Dataset with Multigranular Annotations for Medicine Yunfei Xie Ce Zhou Lang Gao Juncheng Wu Xianhang Li ... Sheng Liu Lei Xing James Zou Cihang Xie Yuyin Zhou LM&MA MedIm 74 24 0 06 Aug 2024
NuLite -- Lightweight and Fast Model for Nuclei Instance Segmentation and Classification C. Tommasino Cristiano Russo A. M. Rinaldi 45 0 0 03 Aug 2024
Co-synthesis of Histopathology Nuclei Image-Label Pairs using a Context-Conditioned Joint Diffusion Model Seonghui Min Hyunwoo Oh Won-Ki Jeong DiffM MedIm 42 4 0 19 Jul 2024
Immunocto: a massive immune cell database auto-generated for histopathology Mikaël Simard Zhuoyan Shen Maria A. Hawkins C. Collins-Fekete Maria A. Hawkins Charles-Antoine Collins-Fekete 34 1 0 03 Jun 2024
BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once Theodore Zhao Yu Gu Jianwei Yang Naoto Usuyama Ho Hin Lee ... B. Piening Carlo Bifulco Mu-Hsin Wei Hoifung Poon Sheng Wang MedIm 36 22 0 21 May 2024
DAWN: Domain-Adaptive Weakly Supervised Nuclei Segmentation via Cross-Task Interactions Ye Zhang Yifeng Wang Zijie Fang Hao Bian Linghan Cai Ziyue Wang Yongbing Zhang 38 3 0 23 Apr 2024
Rotation-Agnostic Image Representation Learning for Digital Pathology Saghir Alfasly A. Shafique Peyman Nejat Jibran A. Khan Areej Alsaafin Ghazal Alabtah H. R. Tizhoosh MedIm 24 6 0 14 Nov 2023
Domain Generalization in Computational Pathology: Survey and Guidelines Mostafa Jahanifar M. Raza Kesi Xu T. Vuong R. Jewsbury ... Neda Zamanitajeddin Jin Tae Kwak S. Raza F. Minhas Nasir M. Rajpoot OOD 28 17 0 30 Oct 2023
Deep Learning Predicts Biomarker Status and Discovers Related Histomorphology Characteristics for Low-Grade Glioma Zijie Fang Yihang Liu Yifeng Wang Xiangyang Zhang Yang Chen ... Zhi Wang Shan Zeng Hong Shen Jun Tan Yongbing Zhang 15 2 0 11 Oct 2023
OCELOT: Overlapped Cell on Tissue Dataset for Histopathology Jeongun Ryu Aaron Valero Puche Jaewoong Shin Seonwook Park Biagio Brattoli ... S. Cho K. Paeng C-Y. Ock D. Yoo Sérgio Pereira 39 23 0 23 Mar 2023
Recommendations on test datasets for evaluating AI solutions in pathology A. Homeyer Christian Geißler L. O. Schwen Falk Zakrzewski Theodore Evans ... Tobias Lang P. Boor Heimo Muller P. Hufnagl N. Zerbe 47 42 0 21 Apr 2022
A Pragmatic Machine Learning Approach to Quantify Tumor Infiltrating Lymphocytes in Whole Slide Images N. Shvetsov Morten Grønnesby Edvard Pedersen Kajsa Møllersen Lill-ToveRasmussen Busund Ruth Schwienbacher L. A. Bongo T. Kilvaer 21 14 0 14 Feb 2022
Robust Interactive Semantic Segmentation of Pathology Images with Minimal User Input Mostafa Jahanifar Neda Zamani Tajeddin Navid Alemi Koohbanani Nasir M. Rajpoot 29 22 0 30 Aug 2021
Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification S. Graham Mostafa Jahanifar A. Azam M. Nimir Yee Wah Tsang ... S. Raza H. Eldaly K. Gopalakrishnan David R. J. Snead Nasir M. Rajpoot 30 124 0 25 Aug 2021
HistoCartography: A Toolkit for Graph Analytics in Digital Pathology Guillaume Jaume Pushpak Pati Valentin Anklin A. Foncubierta M. Gabrani 29 45 0 21 Jul 2021
NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation M. Amgad Lamees A. Atteya Hagar Hussein K. Mohammed Ehab Hafiz ... Critical Care David Manthey Atlanta D. Neurology Lurie Cancer Center 32 73 0 18 Feb 2021
CPP-Net: Context-aware Polygon Proposal Network for Nucleus Segmentation Shengcong Chen Changxing Ding Minfeng Liu Jun Cheng Dacheng Tao 45 46 0 13 Feb 2021
FastPathology: An open-source platform for deep learning-based research and decision support in digital pathology André Pedersen Marit Valla A. Bofin Javier Pérez de Frutos Ingerid Reinertsen Erik Smistad 11 15 0 11 Nov 2020
U-Net and its variants for medical image segmentation: theory and applications N. Siddique Sidike Paheding Colin P. Elkin Vijay Devabhaktuni SSeg 23 1,041 0 02 Nov 2020
Dataset of Segmented Nuclei in Hematoxylin and Eosin Stained Histopathology Images of 10 Cancer Types L. Hou Rajarsi R. Gupta John S. Van Arnam Yuwei Zhang Kaustubh Sivalenka Dimitris Samaras Tahsin M. Kurc Joel H. Saltz 24 45 0 18 Feb 2020