Communication-Efficient Jaccard Similarity for High-Performance
Distributed Genome Comparisons

Communication-Efficient Jaccard Similarity for High-Performance Distributed Genome Comparisons

11 November 2019

Raghavendra Kanakagiri

Mikhail Karasikov

Torsten Hoefler

Edgar Solomonik

Papers citing "Communication-Efficient Jaccard Similarity for High-Performance Distributed Genome Comparisons"

17 / 17 papers shown

Title
High-Performance Filters For GPUs Hunter McCoy S. Hofmeyr Katherine Yelick P. Pandey 13 7 0 18 Dec 2022
Neural Graph Databases Maciej Besta Patrick Iff Florian Scheidl Kazuki Osawa Nikoli Dryden Michal Podstawski Tiancheng Chen Torsten Hoefler AI4CE 47 9 0 20 Sep 2022
ProbGraph: High-Performance and High-Accuracy Graph Mining with Probabilistic Set Representations Maciej Besta Cesare Miglioli P. S. Labini Jakub Tvetek Patrick Iff ... Grzegorz Kwa'sniewski Niels Gleinig Flavio Vella O. Mutlu Torsten Hoefler 37 8 0 24 Aug 2022
PolarFly: A Cost-Effective and Flexible Low-Diameter Topology Kartik Lakhotia Maciej Besta Laura Monroe K. Isham Patrick Iff Torsten Hoefler Fabrizio Petrini 42 18 0 02 Aug 2022
Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly Giulia Guidi Gabriel Raulet D. Rokhsar L. Oliker Katherine Yelick A. Buluç 19 3 0 10 Jul 2022
Parallel and Distributed Graph Neural Networks: An In-Depth Concurrency Analysis Maciej Besta Torsten Hoefler GNN 36 56 0 19 May 2022
Asynchronous Distributed-Memory Triangle Counting and LCC with RMA Caching András Strausz Flavio Vella Salvatore Di Girolamo Maciej Besta Torsten Hoefler 31 12 0 28 Feb 2022
Motif Prediction with Graph Neural Networks Maciej Besta Raphael Grob Cesare Miglioli Nico Bernold Grzegorz Kwa'sniewski ... Raghavendra Kanakagiri Saleh Ashkboos Lukas Gianinazzi Nikoli Dryden Torsten Hoefler 26 38 0 26 May 2021
GraphMineSuite: Enabling High-Performance and Programmable Graph Mining Algorithms with Set Algebra Maciej Besta Zur Vonarburg-Shmaria Yannick Schaffner Leonardo Schwarz Grzegorz Kwa'sniewski ... Philipp Lindenberger Pavel Kalvoda Marek Konieczny O. Mutlu Torsten Hoefler 33 27 0 05 Mar 2021
Substream-Centric Maximum Matchings on FPGA Maciej Besta Marc Fischer Tal Ben-Nun Dimitri Stanojevic Johannes de Fine Licht Torsten Hoefler 14 28 0 28 Oct 2020
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly Giulia Guidi Oguz Selvitopi Marquita Ellis L. Oliker Katherine Yelick A. Buluç 16 14 0 20 Oct 2020
SlimSell: A Vectorizable Graph Representation for Breadth-First Search Maciej Besta Florian Marending Edgar Solomonik Torsten Hoefler 61 64 0 19 Oct 2020
High-Performance Parallel Graph Coloring with Strong Guarantees on Work, Depth, and Quality Maciej Besta Armon Carigiet Zur Vonarburg-Shmaria Kacper Janda Lukas Gianinazzi Torsten Hoefler 20 26 0 26 Aug 2020
The Parallelism Motifs of Genomic Data Analysis Katherine Yelick A. Buluç M. Awan A. Azad Benjamin Brock ... Giulia Guidi S. Hofmeyr Oguz Selvitopi Cristina Teodoropol L. Oliker 11 17 0 20 Jan 2020
Practice of Streaming Processing of Dynamic Graphs: Concepts, Models, and Systems Maciej Besta Marc Fischer Vasiliki Kalavri Michael Kapralov Torsten Hoefler GNN 43 55 0 29 Dec 2019
Slim Graph: Practical Lossy Graph Compression for Approximate Graph Processing, Storage, and Analytics Maciej Besta Simon Weber Lukas Gianinazzi Robert Gerstenberger Andrey Ivanov Yishai Oltchik Torsten Hoefler 27 38 0 18 Dec 2019
Scaling betweenness centrality using communication-efficient sparse matrix multiplication Edgar Solomonik Maciej Besta Flavio Vella Torsten Hoefler 51 77 0 22 Sep 2016