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SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter
  for CPUs, GPUs, and FPGAs
v1v2v3 (latest)

SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs

20 October 2019
M. Alser
Taha Shahroodi
Juan Gómez Luna
C. Alkan
O. Mutlu
ArXiv (abs)PDFHTMLGithub (52★)

Papers citing "SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs"

3 / 3 papers shown
Title
Accelerating Genome Analysis: A Primer on an Ongoing Journey
Accelerating Genome Analysis: A Primer on an Ongoing Journey
M. Alser
Z. Bingöl
Damla Senol Cali
Jeremie S. Kim
Saugata Ghose
C. Alkan
O. Mutlu
68
83
0
30 Jul 2020
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate
  Assembly Polishing Algorithm
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
Can Firtina
Jeremie S. Kim
M. Alser
Damla Senol Cali
A. E. Cicek
C. Alkan
O. Mutlu
47
49
0
12 Feb 2019
ASAP: Accelerated Short-Read Alignment on Programmable Hardware
ASAP: Accelerated Short-Read Alignment on Programmable Hardware
Subho Sankar Banerjee
Mohamed El-Hadedy
Jong Bin Lim
Zbigniew T. Kalbarczyk
Deming Chen
S. Lumetta
Ravishankar Iyer
40
56
0
06 Mar 2018
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